-
### Description of the bug
```
ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:LFQ:PROTEOMICSLFQ (PXD002854-serum.sdrf_openms_design)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:LFQ:…
-
Hi,
I have been following this tutorial on generating spliced and unspliced matrices for RNA velocity analysis: https://bustools.github.io/BUS_notebooks_R/velocity.html#generate_spliced_and_unsplic…
-
The `hits[].projects` values in a `/index/{entity_type}` response come from one bundle per hit, and are not an aggregate from all the bundles for a given project.
For example, imagine multiple bund…
-
Hi Vdemichev,
I am use DIANN 1.8.1 to quantify 2000 MS files, which already create .quant files. The RAM only have 256GB. When second search using newly created spectral library to reanalyse the da…
-
**Describe the bug**
Hello,
I am currently using MaxQuant for data analysis and have encountered an issue after updating from version 2.0.3.0 to 2.5.2.0. Previously, the Peptides.txt file used to …
-
Hi, I'm new to DIA-NN and interested in analysis of DIA-FAIMS files.
Basically each sample has been run with 4 different CVs , So we have 4 files per each sample.
I would be happy to ask 2 differen…
-
Hi,
I want to analysis the Methylation in my data. So I set the user defined PTM
in my config file, I wrote:
data:
enabled: 1
silac:
enabled: 0
filters:
enabled: 1
contaminants: 1
protei…
-
Dear einprot developers,
Currently einprot supports the following species
```
> getSupportedSpecies()
taxId species speciesCommon
1 10090 …
-
Hi there,
I've just started using PLASS, specifically `plass assemble`, and I really like it!
This isn't an issue but a potential enhancement. I was wondering how I might be able to recover abun…
-
Hi !
While working to data from a specific project, I recently noticed that it may happen that in the peptide table generated by ProteinQuantifier, may appear in some protein cases a number of pept…