soedinglab plass issues

soedinglab / plass

sensitive and precise assembly of short sequencing reads

https://plass.mmseqs.com

GNU General Public License v3.0

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issues

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SNPs introduced when using high --max-iterations

#50 Markusjsommer opened 2 weeks ago
0
Feature requests: (Un)trusted contigs and mixed read types support

#49 ohickl opened 2 months ago
0
Data Access

#48 shengxiaobufu opened 2 months ago
1
Penguin: no assembled contigs

#47 cv-1993 opened 3 months ago
0
Insights needed for comparison with other assemblers

#46 GeoMicroSoares opened 7 months ago
1
Alternative codon table

#45 aabaricalla closed 7 months ago
2
Quality trimming reads?

#44 timghaly opened 9 months ago
2
general question to gauge dev opinion/advice on selecting proteins for gene phylogenies

#43 clb21565 closed 1 year ago
2
mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table

#42 SilasK opened 1 year ago
2
High level of duplicated protein sequences

#41 hegardon closed 7 months ago
1
Quantification

#40 stheil15 opened 1 year ago
0
Paired read prediction - mergereads failed

#38 dnolin13 opened 2 years ago
3
Install issues

#37 slschnorr opened 2 years ago
6
Update MMseqs2 submodule

#36 genomewalker closed 3 years ago
0
Use PLASS in metatranscriptomic data

#35 jjsanchezgil opened 3 years ago
5
Issue with Docker image soedinglab/plass:latest

#34 winkel111 closed 3 years ago
2
Empty (len:0) sequences in plass output

#33 aleixop opened 3 years ago
4
Some Issues about the length of protein sequences

#31 susutBu opened 4 years ago
2
Segmentation fault translatenucs

#30 sarah872 closed 4 years ago
2
The output file is empty

#29 Sami-Altayyar opened 4 years ago
1
Use Plass for euk metagenomics data

#28 liuxianghui opened 4 years ago
2
Error running mpi job with class

#27 liuxianghui opened 4 years ago
1
missing handling of small number of input reads

#26 mr-eyes opened 4 years ago
7
map of input sequences to assembled sequence

#25 galicae opened 4 years ago
0
Using already predicted ORFs from reads

#24 genomewalker opened 4 years ago
4
MPI local-tmp

#23 genomewalker opened 4 years ago
1
Final output file size 0

#22 taylorreiter opened 4 years ago
2
Is it possible to read sequences from stdin or to provide multiple unpaired files at once?

#21 mooreryan opened 5 years ago
1
Update README.md

#20 galicae closed 3 years ago
1
Recurrently getting "Kmer matching step died"

#19 apcamargo opened 5 years ago
7
Core dump during assembly

#18 apcamargo opened 5 years ago
2
Using more stringent parameters to avoid spurious sequences

#17 apcamargo opened 5 years ago
9
Can not allocate index memory in DBReader

#16 kihyunee closed 5 years ago
6
Compilation error: zlib found but not working

#15 FranckLejzerowicz opened 5 years ago
4
Assembling big data

#14 lzaramela opened 5 years ago
5
Protein sequence abundance

#13 cmorganl opened 5 years ago
5
Intuitions regarding possible output and previous steps

#12 adriaaula opened 5 years ago
1
Incorrect headers for Nuc -> Protein

#11 ghost opened 5 years ago
7
Defining minimum ORF length doesn't work

#10 genomewalker closed 5 years ago
1
Running plass in parallel on same 'tmp' folder

#9 mhibberd closed 5 years ago
2
Combining single and paired reads

#8 mooreryan closed 5 years ago
2
Automated Docker images with sha256 tags

#7 sminot closed 5 years ago
4
Output FASTA header format?

#6 sjaenick closed 5 years ago
2
Reduce TMP disk usage

#5 genomewalker closed 5 years ago
5
mem or disk issue?

#4 colindaven closed 5 years ago
4
Compilation error - cannot find AminoAcidLookupTables.h

#3 ctb closed 6 years ago
2
Option to change genetic code (translation table)?

#2 sminot closed 6 years ago
8
ID collisions in FASTA output

#1 maitai closed 6 years ago
6