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soedinglab
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plass
sensitive and precise assembly of short sequencing reads
https://plass.mmseqs.com
GNU General Public License v3.0
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Insights needed for comparison with other assemblers
#46
GeoMicroSoares
opened
2 months ago
1
Alternative codon table
#45
aabaricalla
closed
3 months ago
2
Quality trimming reads?
#44
timghaly
opened
4 months ago
2
general question to gauge dev opinion/advice on selecting proteins for gene phylogenies
#43
clb21565
closed
1 year ago
2
mmseqs extractorfs can tranlate orfs but CLI does not allow to specify tranlation table
#42
SilasK
opened
1 year ago
2
High level of duplicated protein sequences
#41
hegardon
closed
2 months ago
1
Quantification
#40
stheil15
opened
1 year ago
0
Paired read prediction - mergereads failed
#38
dnolin13
opened
2 years ago
3
Install issues
#37
slschnorr
opened
2 years ago
6
Update MMseqs2 submodule
#36
genomewalker
closed
2 years ago
0
Use PLASS in metatranscriptomic data
#35
jjsanchezgil
opened
3 years ago
5
Issue with Docker image soedinglab/plass:latest
#34
winkel111
closed
3 years ago
2
Empty (len:0) sequences in plass output
#33
aleixop
opened
3 years ago
4
Some Issues about the length of protein sequences
#31
susutBu
opened
3 years ago
2
Segmentation fault translatenucs
#30
sarah872
closed
3 years ago
2
The output file is empty
#29
Sami-Altayyar
opened
3 years ago
1
Use Plass for euk metagenomics data
#28
liuxianghui
opened
3 years ago
2
Error running mpi job with class
#27
liuxianghui
opened
4 years ago
1
missing handling of small number of input reads
#26
mr-eyes
opened
4 years ago
7
map of input sequences to assembled sequence
#25
galicae
opened
4 years ago
0
Using already predicted ORFs from reads
#24
genomewalker
opened
4 years ago
4
MPI local-tmp
#23
genomewalker
opened
4 years ago
1
Final output file size 0
#22
taylorreiter
opened
4 years ago
2
Is it possible to read sequences from stdin or to provide multiple unpaired files at once?
#21
mooreryan
opened
4 years ago
1
Update README.md
#20
galicae
closed
3 years ago
1
Recurrently getting "Kmer matching step died"
#19
apcamargo
opened
4 years ago
7
Core dump during assembly
#18
apcamargo
opened
4 years ago
2
Using more stringent parameters to avoid spurious sequences
#17
apcamargo
opened
4 years ago
9
Can not allocate index memory in DBReader
#16
kihyunee
closed
4 years ago
6
Compilation error: zlib found but not working
#15
FranckLejzerowicz
opened
4 years ago
4
Assembling big data
#14
lzaramela
opened
4 years ago
5
Protein sequence abundance
#13
cmorganl
opened
4 years ago
5
Intuitions regarding possible output and previous steps
#12
adriaaula
opened
5 years ago
1
Incorrect headers for Nuc -> Protein
#11
ghost
opened
5 years ago
7
Defining minimum ORF length doesn't work
#10
genomewalker
closed
4 years ago
1
Running plass in parallel on same 'tmp' folder
#9
mhibberd
closed
5 years ago
2
Combining single and paired reads
#8
mooreryan
closed
5 years ago
2
Automated Docker images with sha256 tags
#7
sminot
closed
5 years ago
4
Output FASTA header format?
#6
sjaenick
closed
5 years ago
2
Reduce TMP disk usage
#5
genomewalker
closed
5 years ago
5
mem or disk issue?
#4
colindaven
closed
5 years ago
4
Compilation error - cannot find AminoAcidLookupTables.h
#3
ctb
closed
5 years ago
2
Option to change genetic code (translation table)?
#2
sminot
closed
5 years ago
8
ID collisions in FASTA output
#1
maitai
closed
5 years ago
6