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I tried to create a coverage plot along with gene annotation, but it seems that I have to choose between having a coverage plot without gene annotation and not having at all.
I found why it is bu…
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Dear Team,
I am new at multiome analysis and running a tutorial (https://github.com/quadbio/scMultiome_analysis_vignette/blob/main/Tutorial.md) in my data set.
At "Step 4. ChromVAR: another motif …
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Hi,
I am very interested in using Pando to aid in the analysis of my paired snATAC-seq & snRNA-seq of the same samples. I am trying to follow along with the [tutorial](https://quadbiolab.github.io/…
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Hello!
I am having troubles installing isoCirc on the cluster without sudo access. The cluster system administrator tried to install it as well, but faced similar problems (both with pip install is…
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Hi @genegodbold
We have terms for these for viruses:
- PATHGO:0000302 | disrupts JAK-STAT signaling in another organism [Gene--I provide eukaryotic and bacterial examples below]
- PATHGO:0000…
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**Checks before submitting the issue**
* [x] I installed the latest Dictys version successfully
* [x] I downloaded the whole folder for the tutorial
* [x] I ran the tutorial cells and notebooks (if…
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Hi! Thanks for developing LION. During learning LION, I think it's wrong to calculating the metrics in function _Internal.randomForest_CV_. Or I get something wrong with it.
```
library(tidytable…
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Hello!
Firstly, thank you so much for creating such an incredible and useful tool. I have a ChromatinAssay object that I would like to add to my Seurat object. I was not sure on what the best way of …
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I have multimodal (RNA and ATAC seq) data. I want to make use of the tools offered in seurat v5, but just recreating or converting my data in the new v5 format is not straightforward.
Trying to rec…
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Hi, I am trying to deploy Shiny ArchR and I have a directory under /srv/shiny-server/ShinyArchRUiO where all the shiny files reside. However, my ArchR project resides in my home directory /home/susrin…