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quadbio
/
Pando
Multiome GRN inference.
https://quadbio.github.io/Pando/
MIT License
105
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Extract significant modules
#65
AmelZulji
closed
3 weeks ago
1
model overfitting
#64
tkisss
opened
2 months ago
0
Pando output - enhancer regions
#63
valentinaOpazo
opened
2 months ago
0
regions parameter in initate_grn()
#62
sylestiel
opened
2 months ago
4
Question: where to find tutorial seurat object dataset
#61
jennymoon90
closed
2 months ago
1
a subgraph of the GRN specifying only one "target gene"
#60
m03077yhtnt
closed
3 months ago
1
Question on grn output: how to interpret the grn output where there are list of TFs and their target genes?
#59
yojetsharma
opened
3 months ago
1
Error in as_igraph_vs(graph, from) : Invalid vertex names while running plot_tf_network
#58
yojetsharma
opened
3 months ago
1
Error with "method for 'DefaultAssay<-' applied to an object of class "GRNData"
#57
yojetsharma
closed
3 months ago
5
plot_network_graph() only plot target genes
#56
zhenzuo2
opened
5 months ago
1
Questions on integration and interpretation
#55
JABioinf
closed
3 months ago
3
issue in initiate_grn- invalid class "Seurat" object: 'assays' must be a named list
#54
heteyszabolcs
closed
4 months ago
4
Error in find_motifs with invalid version slot in SeuratPlus object
#53
jsacco1
opened
6 months ago
5
Advice about a dataset with conditions
#52
AmelZulji
opened
6 months ago
4
Error with findOverlaps function while initiating grn
#51
niklasbinder
opened
7 months ago
0
infer_grn errors
#50
bjstewart1
opened
7 months ago
0
Question: celltype-specific GRN
#49
tkisss
closed
8 months ago
2
input data normalisation
#48
bjstewart1
opened
8 months ago
7
Where is the Sample Data from Vignettes?
#47
TeodoraTockovska
closed
8 months ago
1
`coef()` results was changed
#46
mkojima123
closed
8 months ago
2
where to download the tutorial data
#45
GouQiao
closed
11 months ago
0
error in initiate_grn()
#44
GouQiao
closed
11 months ago
2
Run pando on dataset with different conditions
#43
JoreVW
closed
8 months ago
1
Error:infer_grn(),
#42
wxpbioinfo
opened
1 year ago
4
Update website link in the readme
#41
Marius1311
closed
1 year ago
0
initiate_grn error
#40
zhijunyuu
closed
1 year ago
3
running time of Pando
#39
crystal0721
closed
11 months ago
1
scRNA data only
#38
dimurali93
closed
1 year ago
1
infer_grn() parallelization cores not delivering results
#37
stran94
closed
1 year ago
1
ERROR in GRN inference
#36
Usamahussein551980
opened
1 year ago
2
Question: Can Pando be used on an unpaired multiomic dataset?
#35
mitchTwoTimes
closed
1 year ago
1
I need your help
#34
Usamahussein551980
closed
1 year ago
3
Question: feature selection for network plots, UMAP embedding
#33
kstrotjohann
closed
1 year ago
1
Error in as.igraph.vs(graph, from) : Invalid vertex names
#32
mitchTwoTimes
opened
1 year ago
2
Question: How to customize GRN plot with metadata
#31
mitchTwoTimes
closed
1 year ago
1
Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?
#30
Sandman-1
opened
1 year ago
24
Error in infer_grn()
#29
TerezaClarence
opened
1 year ago
5
Direction of regulation / highlighting TFs in the network plot
#28
kstrotjohann
closed
1 year ago
2
phastCons for Mus musculus
#27
sylestiel
closed
1 year ago
3
Infer_grn Function Returning Error
#26
Sandman-1
closed
1 year ago
21
Update grn.R
#25
Sandman-1
opened
1 year ago
0
Update grn.R
#24
Sandman-1
opened
1 year ago
1
Error with plot_tf_network
#23
Ping-lin14
closed
1 year ago
1
normalization
#22
xujiahao778899
closed
1 year ago
0
Question on custom motif sets
#21
DanielYuhangLi
closed
1 year ago
2
The model for repressor
#20
yamajackr
closed
1 year ago
1
Module activity between branches (and over pseudotime)
#19
anderswe
closed
1 year ago
6
Error "attempt to select less than one element in integerOneIndex"
#18
lingfeiwang
closed
1 year ago
13
"not-yet-implemented 'Matrix[<-' method"
#17
DanielYuhangLi
closed
1 year ago
3
Installation failure due to Matrix.utils dependency
#16
vkartha
closed
1 year ago
4
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