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### Links
- container collection: shub://wheaton5/souporcell
- GitHub repository or recipe file: https://github.com/wheaton5/souporcell
### Version of Singularity
singularity-ce version 3.…
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If we bootstrap a Docker image, we would want the Singularity container to respect any `WORKDIR` that is defined in the Dockerfile. This is important because sometimes the running or script executable…
vsoch updated
9 months ago
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**Describe the bug**
```
$ module load quay.io/biocontainers/fastp
Lmod Warning: MODULEPATH directory: "~/singularity-hpc/modules" has too many non-modulefiles (413). Please make sure that modul…
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**Is your feature request related to a problem? Please describe.**
This issue is motived by https://github.com/singularityhub/singularity-hpc/issues/645 where we can limit the query of number of cont…
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We would like to use BiG-SCAPE either using Docker or, preferably, singularity. The latest release docker image is not working for us. I understand is under development (see #25 ). There are images in…
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**Describe the bug**
I was trying to run `shpc show` and filter by first x lines using `head` or `tail` and this led to exception
```console
(singularity-hpc) ~/gitrepos/singularity-hpc/ [mai…
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Using your 3.11.0 image on a hosted GitHub Actions runner.
see https://github.com/OpenMS/OpenMS/actions/runs/4495601964/jobs/7909390460
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Hi,
I am attempting to utilize your example code in an HPC environment. As such, I would prefer to generate a singularity container during the build phase as I don't believe I have the permissions …
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Is is possible for a user to mount an Apptainer image on the host filesystem in order to be able to explore the image's content using the host's tools (text editor, image viewer, ...)
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Hi @vsoch,
First of all, thanks for this great tool!
I'm trying to deploy a custom registry on a self-hosted Gitlab instance and use it on our HPC system.
However, it seems that constructing the …