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### Description of the bug
When running the atac-seq pipeline on our SLURM cluster, it keeps failing at seemingly arbitrary points, with an error message saying that the process was "terminated for a…
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Are there any plans to implement the `runtime` `gpu` attribute or to add `hints`? I'm interested in extending `miniwdl-slurm` to specify slurm partitions and schedule GPUs, but I need to be able to a…
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- [Slurm Quick Start Tutorial](https://support.ceci-hpc.be/doc/_contents/QuickStart/SubmittingJobs/SlurmTutorial.html)
- [The Slurm job scheduler](http://www.arc.ox.ac.uk/content/slurm-job-scheduler)…
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I recently noticed that it is no longer possible to pass `--defaultMemory 0` to `toil-cwl-runner`. There's a check in place that enforces its value to be 1 or more. AFAICS this poses a problem when us…
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Once logging is working with single file - rm slurm logs
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Hello, we are interested by using jobstats but so far we kinda failed to install it or at least jobstats does not produce any valid report.
I suspect it comes from the cgroups exporter, or the promet…
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Hello,
Firstly thank you for developing HQ.
I recently came across a crash while testing HQ v0.19.0. The submission script which is submitted to SLURM manager is as follows:
```
hq server st…
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In the SLURM templates the otb.sh submission is conditioned on whether BUSCO will be run, but that conditional statement is opposite in the otb.template.slurm ( `if [[ -z "$BUSCO" ]]` ) and otb.lite.t…
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I just did a new install of CLAW (and required other packages), and I'm getting an error trying to run the example:
```
#snakemake --profile profiles/slurm --use-conda --keep-going
snakemake: e…
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Currently we run AnalyzeManager (data analysis) directly on slurm head node which may not be permitted on general Slurm server.
We may need to think about how to run AnalyzeManager or general pytho…