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DataBiosphere
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toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
http://toil.ucsc-cgl.org/.
Apache License 2.0
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WDL Docker stats support is not documented
#5168
adamnovak
opened
3 days ago
0
Support FTP over SSL
#5167
stxue1
opened
4 days ago
0
Test smarter, not harder
#5166
adamnovak
opened
5 days ago
0
The defined --defaultMemory does not apply to CWL jobs without memory values and 256 is always used instead
#5165
ndonyapour
opened
6 days ago
2
Generic Toil Utilities require cluster utilities
#5164
lonbar
opened
1 week ago
1
Proper way to access local node paths in Toil, AWS Batch backend, for CWL workflows
#5163
robertbio
opened
1 week ago
1
Cut AWS testing costs by 75%
#5162
unito-bot
opened
1 week ago
5
Toil User Surveys
#5161
unito-bot
opened
1 week ago
0
Telemetry About Toil Usage
#5160
unito-bot
opened
1 week ago
1
Send some metrics to QA Dockstore
#5159
unito-bot
opened
1 week ago
9
Toil complains that a filename with spaces "contains illegal characters" while cwltool works fine
#5158
ndonyapour
opened
1 week ago
5
Update flask requirement from <3,>=2.0 to >=2.0,<4
#5157
dependabot[bot]
closed
1 week ago
0
set minimum version of types-psutil to match types update
#5156
mr-c
closed
1 week ago
0
Bump cwltool from 3.1.20241024121129 to 3.1.20241112140730
#5155
dependabot[bot]
closed
1 week ago
0
workDir and jobStore now default to (shared) tmp-outdir-prefix
#5154
gmloose
opened
1 week ago
3
Fix bug in override of coordination directory
#5153
gmloose
opened
1 week ago
2
Bug in overriding coordination_dir in toil/common.py
#5152
gmloose
opened
1 week ago
1
Fix CWL Workflow Slurm memory test
#5151
gmloose
closed
1 week ago
0
Fix failing CWLWorkflowTest
#5150
gmloose
closed
1 week ago
2
Don't set `no_listing` in builder init for Workflows
#5149
stxue1
closed
1 week ago
1
Reboot support for server mode
#5148
unito-bot
opened
2 weeks ago
0
Make Slurm Docker images for CI testing
#5147
unito-bot
opened
2 weeks ago
0
Update htcondor requirement from <11,>=10.2.0.post1 to >=10.2.0.post1,<25
#5146
dependabot[bot]
closed
1 week ago
1
Update to Python 3.13
#5145
stxue1
closed
1 week ago
0
Update pytest-cov requirement from <6,>=2.12.1 to >=2.12.1,<7
#5144
dependabot[bot]
closed
3 weeks ago
0
workDir and jobStore should default to (shared) tmp-outdir-prefix
#5143
gmloose
opened
4 weeks ago
1
Add FTP support to jobstores
#5142
stxue1
closed
3 days ago
0
Separate unread and read stats and logging files and avoid a circular rename
#5141
adamnovak
closed
5 days ago
0
JobServiceTest.testServiceParallelRecursive can time out
#5140
adamnovak
opened
1 month ago
1
Bump cwltool from 3.1.20241007082533 to 3.1.20241024121129
#5139
dependabot[bot]
closed
1 month ago
0
Don't error on collision
#5138
stxue1
closed
3 weeks ago
0
Collision error when passing input as the output in toil-cwl-runner
#5137
stxue1
closed
3 weeks ago
0
Fix unexecuted CWL jobs with dynamic requirements failing on missing inputs
#5136
adamnovak
closed
3 weeks ago
0
Add leader import fallback to running imports on workers
#5135
stxue1
opened
1 month ago
0
Add FTP support to `AbstractJobStore._get_size`
#5134
stxue1
closed
3 days ago
1
Add filesize sniffing and parallelize importing on jobs
#5133
stxue1
opened
1 month ago
0
Bump mypy from 1.12.1 to 1.13.0
#5132
dependabot[bot]
closed
1 month ago
0
Bump mypy from 1.12.0 to 1.12.1
#5131
dependabot[bot]
closed
1 month ago
0
Upgrade to Python 3.13
#5130
stxue1
closed
1 week ago
0
Update types-boto requirement from <2.49.18.20240807 to <2.49.18.20241020
#5129
dependabot[bot]
closed
1 month ago
0
Py39 upgrade
#5128
mr-c
closed
1 month ago
0
CWL Slurm memory test: simplify
#5127
mr-c
closed
1 month ago
0
Remove python3.8 testing.
#5126
DailyDreaming
closed
1 month ago
2
Python3.8 has reached End of Life
#5125
DailyDreaming
closed
1 week ago
1
Bump mypy from 1.11.2 to 1.12.0
#5124
dependabot[bot]
closed
1 month ago
1
New AWS jobstore.
#5123
DailyDreaming
opened
1 month ago
0
Replace deprecated pipes module
#5122
stxue1
closed
1 month ago
0
Deal with normalized paths when importing from a WDL JSON file
#5121
stxue1
closed
1 month ago
0
WDL has trouble with JSON file imports due to normalization
#5120
stxue1
closed
1 month ago
0
toil partially incompatible with Python 3.13 due to removal of "pipes" from the standard library
#5119
mr-c
closed
1 month ago
1
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