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Hi, I've installed PneumoCaT using the documentation in the pdf.
Rather than using Miniconda, I used Anaconda.
Firstly I installed all the dependencies in a venv and then I cloned the git repo.
Wor…
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[this ticket may be moved to a different repo. A lot of the functionality is the same as geferencer so putting here for now]
given a list of taxa (species and intermediate nodes), pre-generate a ta…
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When I'm getting my results after selecting the common taxonomy rules, there appears to be an issue when there are multiple Uniprot hits for a single metaprotein. Sometimes it will display the common …
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I am trying to output a sam file in the same order as the input fastq but that --reorder flag doesn't seem to work with version 2.3.3?
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{
"body": {
"sections": {
"section": [
{
"@id": "sec1",
"section-title": "Introduction",
"para": [
{
…
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Hi,
Congratulations on your works, I just tested SLIMM and I found it was partially working as I wished.
I downloaded the 5 sequences as references to generate simulation read with [art](https:/…
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Note the missing leucine.
beta
>fig|1313.6068.peg.662|ERS013935_00622| Chloramphenicol acetyltransferase (EC 2.3.1.28) [Streptococcus pneumoniae strain spnIC28 | 1313.6068]
MNFNKIDLDNWKRKEIFNHY…
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Between the Vocabulary 20150403 and 20160620 we have lost some important ICD --> SNOMED Mappings.
Attached is an XLS. The first tab shows ICD9CM/ICD10/ICD10CMs that lack a mapping to SNOMED in 3 dif…