-
Even though bowtie2 indexes wheat genome tophat2 will not find the indexes. Someone at TGAC has fixed the code for this in a day and I have requested if he will share but have you guys got a fix that …
-
When starting the extensions I see this
![image](https://github.com/fflewddur/tophat/assets/15034009/b8e2f8ed-f993-4028-9661-c82cd4d93ed0)
In the settings dialog I get this error
```
Error: …
-
Hi,
I run the bioinformatics core at La Jolla Institute for Immunology (lji.org), and one of our researchers is interested in running your tool. I've had a quick look through the repo and was unab…
-
`ASmooth` uses an internal default background estimation (ring of 3-4 sigma for Gaussian, and 1-4/3 sigma for Tophat), which should be added as an option to the `ASmooth` class.
-
#### :tophat: User Story
As stated by @xabier in https://github.com/AjuntamentdeBarcelona/decidim/issues/1089, navigating categories should rethought in a way that:
1. Gives a clear image of the s…
-
If you accidentally provide a ill-formatted configuration file (such as forgetting to specify the config and resulting in the first file being considered the config), you get a confusing error message…
-
In many ways much more helpful than seeing log output of scraper to figure out whether scraper is running and doing its thing.
At the moment we only see the domains it's hit after the scraper finishe…
-
Via email from MKM try the following changes:
1. Use htseq-count parameters `htseq-count --format=bam --stranded=reverse -r 'pos' --mode=intersection-nonempty $IN_FOLDER/$FILE/merged.bam $GTF > $OUT_F…
-
As the numpy version does not specified in the setup file, Passporteye automatically install the lastest version of numpy, causing this error
-
### Version
1.2.9
### Operating system type + version
Mac OS X 10.11.6
### Behavior
The rectilinear infill of solid (top and bottom) layers is often needlessly executed in two or more phases, causi…