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results_transcripts = stattest(bg_filt, feature="transcript" , covariate = "group" , getFC = TRUE, meas = "FPKM")
Coefficients not estimable: libadjust
Error in coef[r2, ]
i am facing this error…
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One of the differences between VEP and varcode is that VEP is happy to annotate ALL transcripts in its database, including pseudo-genes. Varcode will limit itself to transcripts which have [`Transcrip…
joaoe updated
7 years ago
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Hi Nicole,
Could you add an option in the plotTranscripts() function that allows users to highlight a transcript and select one or two specific transcripts to visualize? so then, I don't have to v…
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We could log chat transcripts. This would potentially be useful in training an AI to describe faces.
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It would be useful to have a consensus schema for what a transcript is.
Prior art includes (but is certainly not limited to)
- a branch somewhere in biocommons by @reece
- cdot transcripts http…
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Hello. This is a feature request vs bug, methinks.
Have you looked at extracting captions from a live stream. If you look at any example (https://www.youtube.com/whitehouse) of a live stream, while…
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Hey Quentin,
I've been trying to use the CLI workflow to segment a MERSCOPE dataset. After successfully creating patches I see that the formatting for the transcript.csv file was quite variable acr…
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hi there,
I am working on a viral genome, where the annotations (based on ribosome profiling) fairly often include >1 CDS per exon. Using `makeTxDbFromGFF` means that some of these CDSs get droppe…
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yep
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- Could we create a "Predicted Enhancers" section to replace the "Regulatory Regions" section? Then we can show elements that are predicted to regulate the gene (as on the variant page), rather than …