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uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Apache License 2.0
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Keep transcript hgnc field
#263
bsgiles73
closed
2 weeks ago
0
sqlite support?
#262
anderspitman
closed
1 month ago
3
Merge Invitae local changes used to build recent UTA
#261
bsgiles73
opened
2 months ago
4
feat(IPVC-2386): Backfill transl_excepts
#260
bsgiles73
closed
4 months ago
0
IPVC-2379: add necessary NCBI input files to download config
#259
bsgiles73
closed
4 months ago
0
feat(IPVC-2280): Add codon_table to Transcript
#258
sptaylor
closed
5 months ago
0
feat(IPVC-2276): skip over accessions that are not present in seqrepo and log them to a file
#257
sptaylor
closed
5 months ago
0
Fix uta container search path
#256
b0d0nne11
closed
5 months ago
2
IPVC-2246 Add seqrepo load to uta build script
#255
bsgiles73
closed
6 months ago
0
feat(IPVC-2231): add script to parse genomic gff
#253
sptaylor
closed
6 months ago
0
feat(ncbi-downloader): migrating the NCBI downloader into new update procedure
#252
andreasprlic
closed
6 months ago
0
Make UTA PGD base URL configurable
#251
b0d0nne11
closed
7 months ago
0
docs: update readme instructions for installing db dumps
#250
korikuzma
closed
6 months ago
2
docs: fix linking to issue in readme
#249
ahwagner
closed
7 months ago
4
Dockerize uta build
#248
naomifox-invitae
closed
5 months ago
4
Update CODEOWNERS
#247
andreasprlic
closed
6 months ago
6
Build updates
#246
afrubin
closed
11 months ago
0
README updates
#245
afrubin
closed
11 months ago
1
Automate UTA yml stub
#244
ktennessenInvitae
closed
11 months ago
3
GHA for automating UTA
#243
ktennessenInvitae
closed
11 months ago
1
Cannot connect to DB (and a variant question)
#242
pablosolar
closed
6 months ago
7
Consider standardized schema for transcripts
#241
holtgrewe
opened
1 year ago
3
Fix UTA host DNS name in README
#240
holtgrewe
closed
1 year ago
0
Documentation for installing UTA locally on Mac
#239
korikuzma
closed
6 months ago
4
solved
#238
asmlgkj
closed
1 year ago
2
Unable to use the uta_20210129 locally or in docker
#237
LydiePrevost
closed
1 year ago
8
Workflow for adding updated refseq alignment data
#236
soensz01
closed
6 months ago
4
1
#235
worker000000
closed
2 years ago
2
Add support for the telomer-to-telomer assembly (T2T)
#234
andreasprlic
opened
3 years ago
4
ENSEMBL transcripts not versioned
#233
ahwagner
opened
3 years ago
7
20210129 version not on dockerhub
#232
korikuzma
closed
10 months ago
4
Building from a custom source
#231
sstadick
closed
6 months ago
4
Merge Invitae local changes used to build recent UTA
#230
reece
closed
3 years ago
4
Invitae local changes
#229
safay
closed
3 years ago
3
Refreshing tx_similarity_mv takes several hours
#228
fdlk
closed
12 months ago
9
why I can not find table uta_20180821.meta ?(docker version)
#227
nordhuang
closed
6 months ago
5
is there difference between uta_20150827 and uta_20180821 in above commands?
#226
nordhuang
closed
4 years ago
1
ncbi-parse-gff error:
#225
ypchan
closed
6 months ago
6
ncbi-parse-gbff error
#224
ypchan
closed
4 years ago
1
GRCh38 splign alignments available?
#223
deannachurch
closed
5 months ago
10
RFC: Should we migrate to fully-justified alignments?
#222
reece
opened
5 years ago
4
collected notes for next update
#221
reece
closed
3 months ago
7
Enable custom transcripts and custom genome-transcript alignments
#220
reece
closed
4 years ago
3
Python3 updates
#219
zackzwiesler0
closed
5 years ago
3
uta_20180821.pgd.gz dump seems to be incomplete
#218
AleksandrSl
closed
1 year ago
3
HGNC Values are Missing on Some Transcripts
#217
akeeeshi
opened
5 years ago
7
am37.c_to_g(hp.parse_hgvs_variant('NM_005117.2:c.295C>T')) fails with Alignment is incomplete.
#216
jfreidin
opened
5 years ago
4
Public UTA instance is missing NM_020975.5, which differs from NM_020975.4:c.2307_2309GCG>TCA.
#215
jfreidin
closed
5 years ago
6
add_ensembl_data_v2
#214
Peter-J-Freeman
closed
5 years ago
1
Last version of uta database is absent from dockerhub
#213
AleksandrSl
closed
6 years ago
1
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