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For the "old" version of xcms, since the `input` param is not named `input`, the job fails.
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Hi,
It would be nice and useful, as an **enhancement**, to have an easy access to raw data files and isa files as an output of this tool, or being able to retrieve those with another tool afterwards.…
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Sometimes during MS files life they are stored under filepaths with accent (e.g in french metabolomics is m**é**tabolomique)
and so when converting to mzXML (or other format) sometimes those paths ar…
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Hi, sometimes checkformat propose good solution to correct the matrices, may be we can find a way to automatically apply correction an d re-run checkformat on those autocorrected matrices.
exemple:…
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@melpetera in an email - 15/09/15
> Point 1 : paramètre Mode
>
> Ce paramètre est prévu a priori pour pouvoir faire des anova au choix sur les lignes et colonnes (good point d'un point de vue pureme…
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The categorization of the list of tools in our Galaxy deployment needs to be discussed and reworked.
* Some tools fit under more than one category, so should probably be put under a ore generic c…
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I have a two-part feature request for `query_tabular`, assuming that it seems reasonable to you.
As a simple example, I have a TSV file similar to the following:
| sampleMetadata | class | polar…
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When running xcms_xcmsset (revision 15646e937936) I get an empty result. The resulting dataset is marked as successful, but its empty.
In the dataset preview I see the following text:
`code f…
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Hi @djcomlab, @proccaserra,
I'd like to start translating my R code into Python code, as we discussed at Halle workshop.
Is it the isatools package I have to use ?
I cannot find a method to load …
pkrog updated
7 years ago
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Then Galaxy can parallelize the execution.
For backwards compatibility, check at
https://github.com/workflow4metabolomics/xcms/blob/master/src/xcms_w4m_script/xcms.r#L122
if a ZIP or an mzML/netCDF/…