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Hi,
I used your test case, the program reported the following error "unsufficient number of samples in model:MSINR21_MSS: 1 samples, MSINR21_MSI: 0 samples"
I am wondering how to establish a b…
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Hi! Thanks for the effort on this tool, definitely want it to work for us. We are utilizing the QIAseq primer extension design, meaning there is only a single primer region we are concerned about. …
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Alternative spacing between genes would be great so one can remember gene boundaries
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Hi.
Thanks for a great pipeline!
I have a population of cells where cells with two different knock-in single nucleotide substitutions are present amongst unedited cells. I would like to quantify th…
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Hi,
I run olivar on Bordetella pertussis genome. However, The progress bar remains at 0% without any changes.
 if I set --n_reads to higher than 2000000? For 1,000,000 and 2,000,000 I do get output. The command that I'm using is
```
python simulate_meta…
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I have some sets of dual indexed fungal ITS amplicon pools from specimens. One is 288 specimens and the other is 480 specimens if they would be helpful at all in developing methods.
Could also dis…
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Hello everyone,
This is my first commit and although I have been searching for answers around the web, I do apologize if this is redundant!
From preliminary 16s microbiome relative abundance dat…
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I installed following the directions here https://github.com/pinellolab/CRISPResso2/discussions/158. I downloaded the base pair example file and ran the command provided from examples but I am getting…
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I am using a custom amplicon panel for wastewater sequencing and would like to know the process of adding this to the primer sets folder.
E.g. The naming conventions needed and how to go about gene…