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Inspired by Runic.jl I used the following install:
```
julia --project=@AirspeedVelocity -e 'import Pkg; Pkg.add("AirspeedVelocity")'
alias benchpkg="julia --project=@AirspeedVelocity -e 'using …
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In conversation [here](https://github.com/dask/distributed/pull/278#issuecomment-221188100) it was suggested by @minrk and @ogrisel that we set up something like https://github.com/spacetelescope/asv …
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Hi there,
I have run into a weird issue using phyloseq. I am working with two objects, ps1919 with 35 samples and ps1144 with 185 samples. When I merge the two, they are deleting 10 cases, since the…
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Hey @AstrobioMike hope you are well. I ran across a situation in your full amplicon example that breaks the tutorial. Not sure if its worth mentioning but in the event that decontam doesn't reveal any…
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Hi !
I had the idea to filter my ASVs from a threshold number of reads determined from my controls (>10 reads). I have 24 controls for 148 samples. However, I was advised to use the decontam package…
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Add OWASP Application Security Verification Standard methodology JSON file.
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We currently benchmark with [ASV](http://modin.org/modin-bench/#/) which tests for regressions in individual functions. It would be nice to test for the interaction of 2+ functions.
A brute force a…
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```py
$ cat benchmarks/test.py
class TimeBenchmarkTest:
def setup(self):
self.x = []
def time_1(self):
assert len(self.x) == 0
self.x.append(0)
def time…
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In some cases, a user might have sequenced an amplicon that is longer than the sequences in the database one wants to use. For this to work, ASV sequences could be cut before taxonomy assignment.
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https://cluster.klima.uni-bremen.de/~github/asv_logs/92053.txt
cc @TimoRoth