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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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107
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Add MACSE to enable frame-shift detection for COI
#758
hjarnek
opened
23 hours ago
4
Cosmetic improvements of the README
#757
d4straub
closed
6 days ago
1
fix differential abundance analysis documentation
#756
d4straub
closed
1 week ago
1
Release 2.10.0
#755
d4straub
closed
6 days ago
2
Version update to 2.10.0
#754
d4straub
closed
1 week ago
2
Add ANCOMBC
#753
d4straub
closed
1 week ago
2
add GTDB RS220
#752
d4straub
closed
1 week ago
4
sbdi-gtdb=R08-RS214-1 (r214)
#751
erikrikarddaniel
closed
2 weeks ago
5
Fix sorting in overall_summary.tsv
#750
d4straub
closed
2 weeks ago
1
Create barplot also without metadata
#749
d4straub
closed
2 weeks ago
2
Fix misleading error message and documentation
#748
d4straub
closed
2 weeks ago
2
Template update 2.14.1
#747
d4straub
closed
2 weeks ago
2
Misleading text in output documentation
#746
d4straub
closed
2 weeks ago
1
There is no qiime2 result file in the results
#745
petemeng
closed
1 month ago
2
Cutadapt with "-u" instead of "fw/rv_primer seq"
#744
ilwookkim
closed
1 month ago
1
Analyse data set that contains unknown primer set
#743
ilwookkim
closed
1 month ago
5
`overall_summary.tsv` sometimes with misleading numbers in 2.9.0
#742
agrier-wcm
closed
2 weeks ago
11
Adding ONT read support for ampliseq
#741
ShareiFae
opened
1 month ago
2
Important! Template update for nf-core/tools v2.14.1
#740
nf-core-bot
closed
2 weeks ago
0
Important! Template update for nf-core/tools v2.14.0
#739
nf-core-bot
closed
1 month ago
1
Abundance plots for qiime2 results without metadata provided
#738
SergeWielhouwer
closed
2 weeks ago
3
Running test error
#737
aslangabriel99
closed
2 months ago
1
multi-region analysis: sidle/reconstructed/reconstructed_merged.tsv OCCATIONALLY mis-formatted
#736
d4straub
closed
1 month ago
1
DADA2 split regions singularity
#735
binnuor
closed
2 months ago
13
Accessing 16S gene identifiers
#734
annotatebio
opened
2 months ago
13
Misleading error message when samples are not passing filterandtrim
#733
d4straub
closed
2 weeks ago
1
ERROR: R_HOME ('/usr/local/lib/R') not found
#732
WangLab-SCSIO
closed
1 month ago
5
ANCOM-BC for differentially abundant taxa
#731
enriiquee
closed
1 week ago
2
After release PR - bump version to 2.10.0dev
#730
d4straub
closed
3 months ago
2
Retrieve Sidle container from quay.io/nf-core instead of docker.io/d4straub
#729
d4straub
closed
3 months ago
2
Update nextflowschema
#728
d4straub
closed
3 months ago
2
ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE .........has been broken
#727
JayalalKJ
closed
2 months ago
3
fix Download Pipeline Workflow
#726
d4straub
closed
3 months ago
2
Release 2.9.0
#725
d4straub
closed
3 months ago
2
bump version to 2.9.0
#724
d4straub
closed
3 months ago
1
Update documentation
#723
d4straub
closed
3 months ago
1
Update summarize_barrnap.py
#722
vaulot
closed
3 months ago
3
Fix groovyjarjarantlr4.v4.runtime.LexerNoViableAltException
#721
d4straub
closed
3 months ago
2
Update nf-core modules, DADA2, and Phyloseq
#720
d4straub
closed
3 months ago
2
Export all process software versions
#719
d4straub
closed
3 months ago
1
Require a minimum sequence length of 50bp after ITSx
#718
d4straub
closed
3 months ago
4
Fix file sorting with radix method
#717
d4straub
closed
3 months ago
2
Update summarize_barrnap.py
#716
vaulot
closed
3 months ago
3
fix vsearch cluster filtering
#715
d4straub
closed
3 months ago
2
Barrnap filtration
#714
vaulot
closed
3 months ago
4
Update template 2.13.1
#713
d4straub
closed
3 months ago
3
Template update 2.13.1
#712
d4straub
closed
3 months ago
1
Fix gtdb bacteria info only
#711
danilodileo
closed
3 months ago
2
Remove phytoref
#710
danilodileo
closed
3 months ago
5
Remove PhytoRef as it's included in PR2 5.0.0
#709
erikrikarddaniel
closed
3 months ago
1
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