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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Update dada_ref_taxonomy with unite10
#804
jtangrot
closed
1 day ago
0
Dada2 MergePairs : consensus between merging & concatenating reads
#803
weber8thomas
opened
2 days ago
7
Support for TreeSummarizedExperiment
#802
TuomasBorman
opened
2 days ago
2
Add param --quality_type
#801
d4straub
opened
3 days ago
0
Fix SH files for unite9
#800
jtangrot
closed
1 day ago
2
Dada2 MergePairs : consensus between merging & concatenating reads
#799
weber8thomas
closed
2 days ago
1
Add SILVA 138.2 for DADA2
#798
d4straub
closed
1 day ago
3
Update QIIME2 from 2023.7 to 2024.10
#797
d4straub
closed
2 days ago
1
Bump version to 2.13.0dev
#796
d4straub
closed
1 week ago
0
Prepare release 2.12.0
#795
d4straub
closed
1 week ago
2
Release 2.12.0
#794
d4straub
closed
1 week ago
2
Update Picrust2 and nf-core modules
#793
d4straub
closed
1 week ago
2
Remove white space in process tags
#792
d4straub
closed
1 week ago
2
Addition of SILVA Release 138.2
#791
d4straub
closed
1 day ago
2
standardize the samplesheet for ampliseq to the other nf-core pipelines
#790
jenmuell
opened
3 weeks ago
2
Process tag can cause failures on some systems when containing white spaces
#789
d4straub
closed
1 week ago
0
Add Unite 10.0 databases to DADA2 methods
#788
erikrikarddaniel
closed
3 weeks ago
1
Improving phylogenetic placement
#787
danilodileo
opened
3 weeks ago
0
fix --dada_ref_taxonomy silva=132
#786
d4straub
closed
4 weeks ago
1
merging template updates v3.0.2
#785
d4straub
closed
1 month ago
5
ERROR ~ No such variable: outfile
#784
Luke-ebbis
closed
1 month ago
5
Important! Template update for nf-core/tools v3.0.2
#783
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.1
#782
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v3.0.0
#781
nf-core-bot
closed
1 month ago
1
SUMMARY_REPORT failing for silva=132 database
#780
sonalhenson
closed
4 weeks ago
2
GSR-DB
#779
dbu008
opened
1 month ago
1
sidle - Plugin error from feature-classifier
#778
Juke34
closed
1 month ago
2
variation in Dad2 and QIIME2 output
#777
sajjadasaf
closed
2 months ago
3
Inconsistent taxonomic assignments with EPA-NG
#776
VeronicRojo
opened
2 months ago
2
Unclassified
#775
kesava31
closed
4 weeks ago
3
Two minor things running on Google batch
#774
lch14forever
closed
4 weeks ago
1
phred score mis-detection by dada2
#773
amakunin
opened
3 months ago
9
Bump version 2.12.0dev
#772
d4straub
closed
3 months ago
1
Release 2.11.0
#771
d4straub
closed
3 months ago
3
Bump version to 2.11.0
#770
d4straub
closed
3 months ago
1
Fix --*_ref_taxonomy validation
#769
d4straub
closed
4 months ago
2
New (10.0) version of Unite databases available to `--dada_ref_taxonomy`
#768
erikrikarddaniel
closed
1 day ago
1
Taxonomy database choices not validated against permitted values since 2.9.0
#767
erikrikarddaniel
closed
4 months ago
3
Fix unite urls
#766
erikrikarddaniel
closed
4 months ago
6
Add sbdi-gtdb R09-RS220
#765
erikrikarddaniel
closed
4 months ago
5
Error "Can't stage file https://files.plutof.ut.ee:" Download fail
#764
himamura2
closed
4 months ago
7
Pipeline fails when run with a lot of cores
#763
kdivilov
closed
1 week ago
9
Update documentation: ASV post processing & parameters description
#762
d4straub
closed
4 months ago
2
fix sample sheet tests with meta.id
#761
d4straub
closed
4 months ago
1
Fix `meta.id` to `meta.sample` for early tests on sample sheet
#760
d4straub
closed
4 months ago
2
bump version to 2.11.0dev
#759
d4straub
closed
4 months ago
2
Add MACSE to enable frame-shift detection for COI
#758
hjarnek
opened
4 months ago
6
Cosmetic improvements of the README
#757
d4straub
closed
4 months ago
1
fix differential abundance analysis documentation
#756
d4straub
closed
4 months ago
1
Release 2.10.0
#755
d4straub
closed
4 months ago
2
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