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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Update nextflowschema
#728
d4straub
closed
6 months ago
2
ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_MERGE .........has been broken
#727
JayalalKJ
closed
5 months ago
3
fix Download Pipeline Workflow
#726
d4straub
closed
6 months ago
2
Release 2.9.0
#725
d4straub
closed
6 months ago
2
bump version to 2.9.0
#724
d4straub
closed
6 months ago
1
Update documentation
#723
d4straub
closed
6 months ago
1
Update summarize_barrnap.py
#722
vaulot
closed
6 months ago
3
Fix groovyjarjarantlr4.v4.runtime.LexerNoViableAltException
#721
d4straub
closed
6 months ago
2
Update nf-core modules, DADA2, and Phyloseq
#720
d4straub
closed
6 months ago
2
Export all process software versions
#719
d4straub
closed
6 months ago
1
Require a minimum sequence length of 50bp after ITSx
#718
d4straub
closed
6 months ago
4
Fix file sorting with radix method
#717
d4straub
closed
6 months ago
2
Update summarize_barrnap.py
#716
vaulot
closed
6 months ago
3
fix vsearch cluster filtering
#715
d4straub
closed
6 months ago
2
Barrnap filtration
#714
vaulot
closed
6 months ago
4
Update template 2.13.1
#713
d4straub
closed
6 months ago
3
Template update 2.13.1
#712
d4straub
closed
6 months ago
1
Fix gtdb bacteria info only
#711
danilodileo
closed
6 months ago
2
Remove phytoref
#710
danilodileo
closed
6 months ago
5
Remove PhytoRef as it's included in PR2 5.0.0
#709
erikrikarddaniel
closed
6 months ago
1
Does the `gtdb` database only include Bacteria?
#708
erikrikarddaniel
closed
6 months ago
5
12S taxonomic classification databases
#707
emmastrand
opened
7 months ago
3
minor improvement of sort() before denoising with method = "radix
#706
ulrichmarkus
closed
6 months ago
2
Error No subject alternative DNS name matching zenodo.org found
#705
enriiquee
closed
7 months ago
2
ampliseq fails during taxonomy assignation when processing ITS sequences
#704
eperezv
closed
6 months ago
14
Getting ca 50% more ASVs than when using DADA2 on QIIME2
#703
eperezv
closed
7 months ago
2
Add multiple regions analysis / 5R / SMURF / q2-sidle
#702
d4straub
closed
6 months ago
4
Multipe region amplicon sequencing analysis support (5R / SMURF / q2-sidle)
#701
d4straub
closed
6 months ago
1
Added --save_intermediates
#700
d4straub
closed
7 months ago
2
Fix README
#699
d4straub
closed
7 months ago
2
test_full Cannot access file fastq
#698
jambler24
closed
8 months ago
1
Merging template updates 2.12
#697
d4straub
closed
8 months ago
4
When using `--vsearch_cluster`, if you have many thousands of clusters, `AMPLISEQ:FILTER_CLUSTERS` will fail with an `Argument list too long` error.
#696
agrier-wcm
closed
6 months ago
8
Important! Template update for nf-core/tools v2.12
#695
nf-core-bot
closed
8 months ago
0
Adding qza file for downstream analysis in R
#694
asgarhussain
closed
7 months ago
3
Launch webpage not working
#693
kjurdzinski
closed
8 months ago
4
bump-version 2.9.0dev
#692
d4straub
closed
8 months ago
2
Reviewer comments 2.8.0
#691
d4straub
closed
8 months ago
2
Release 2.8.0
#690
d4straub
closed
8 months ago
2
bump version to 2.8.0
#689
d4straub
closed
8 months ago
1
Update docs, citations and usage with new taxonomic reference databases
#688
d4straub
closed
8 months ago
1
fix conda package in FILTER_SSU
#687
d4straub
closed
8 months ago
1
nf-core/ampliseq with conda - change bioconductor-biostrings
#686
ulrichmarkus
closed
8 months ago
2
Allow stratified output from picrust2
#685
hh1985
closed
9 months ago
4
Important! Template update for nf-core/tools v2.11.1
#684
nf-core-bot
closed
9 months ago
1
Merging template updates 2.11
#683
d4straub
closed
9 months ago
5
Important! Template update for nf-core/tools v2.11
#682
nf-core-bot
closed
9 months ago
0
Add two parameters for taxonomic classification with DADA2
#681
d4straub
closed
9 months ago
3
Improved pipeline summary report & error message
#680
d4straub
closed
9 months ago
2
Prevent masking low complexity regions by VSEARCH
#679
d4straub
closed
9 months ago
2
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