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nf-core
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ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
https://nf-co.re/ampliseq
MIT License
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Error No subject alternative DNS name matching zenodo.org found
#705
enriiquee
closed
9 months ago
2
ampliseq fails during taxonomy assignation when processing ITS sequences
#704
eperezv
closed
8 months ago
14
Getting ca 50% more ASVs than when using DADA2 on QIIME2
#703
eperezv
closed
9 months ago
2
Add multiple regions analysis / 5R / SMURF / q2-sidle
#702
d4straub
closed
8 months ago
4
Multipe region amplicon sequencing analysis support (5R / SMURF / q2-sidle)
#701
d4straub
closed
8 months ago
1
Added --save_intermediates
#700
d4straub
closed
9 months ago
2
Fix README
#699
d4straub
closed
9 months ago
2
test_full Cannot access file fastq
#698
jambler24
closed
9 months ago
1
Merging template updates 2.12
#697
d4straub
closed
9 months ago
4
When using `--vsearch_cluster`, if you have many thousands of clusters, `AMPLISEQ:FILTER_CLUSTERS` will fail with an `Argument list too long` error.
#696
agrier-wcm
closed
8 months ago
8
Important! Template update for nf-core/tools v2.12
#695
nf-core-bot
closed
9 months ago
0
Adding qza file for downstream analysis in R
#694
asgarhussain
closed
9 months ago
3
Launch webpage not working
#693
kjurdzinski
closed
10 months ago
4
bump-version 2.9.0dev
#692
d4straub
closed
10 months ago
2
Reviewer comments 2.8.0
#691
d4straub
closed
10 months ago
2
Release 2.8.0
#690
d4straub
closed
10 months ago
2
bump version to 2.8.0
#689
d4straub
closed
10 months ago
1
Update docs, citations and usage with new taxonomic reference databases
#688
d4straub
closed
10 months ago
1
fix conda package in FILTER_SSU
#687
d4straub
closed
10 months ago
1
nf-core/ampliseq with conda - change bioconductor-biostrings
#686
ulrichmarkus
closed
10 months ago
2
Allow stratified output from picrust2
#685
hh1985
closed
11 months ago
4
Important! Template update for nf-core/tools v2.11.1
#684
nf-core-bot
closed
11 months ago
1
Merging template updates 2.11
#683
d4straub
closed
11 months ago
5
Important! Template update for nf-core/tools v2.11
#682
nf-core-bot
closed
11 months ago
0
Add two parameters for taxonomic classification with DADA2
#681
d4straub
closed
11 months ago
3
Improved pipeline summary report & error message
#680
d4straub
closed
11 months ago
2
Prevent masking low complexity regions by VSEARCH
#679
d4straub
closed
11 months ago
2
Debug information for docker-based run.
#678
hh1985
closed
11 months ago
4
Update sbdiexport
#677
jtangrot
closed
11 months ago
1
Fix phyloseq input
#676
d4straub
closed
11 months ago
2
Add Zehr nifH database
#675
erikrikarddaniel
closed
11 months ago
1
Add PhytoRef
#674
erikrikarddaniel
closed
11 months ago
2
Fix qiime2 taxonomy part of summary report using unavailable information.
#673
MatthewJM96
closed
11 months ago
2
Update output docs for collapsed abundance tables
#672
danclaytondev
closed
11 months ago
4
Update Output Docs for Collapsed Abundance Tables
#671
danclaytondev
closed
11 months ago
1
Add option to assign ASV to multiple species with DADA2
#670
andand
closed
11 months ago
3
Allow to analyse 454 sequencing data
#669
d4straub
opened
11 months ago
2
Edge case: Clustering with VSEARCH fails at QIIME2_INSEQ
#668
d4straub
closed
11 months ago
1
Added QIIME2 custom reference database support.
#667
MatthewJM96
closed
11 months ago
10
Greengenes2 2022.10 Support
#666
MatthewJM96
closed
10 months ago
5
Add custom qiime reference database support to Ampliseq.
#665
MatthewJM96
closed
11 months ago
2
Add greengenes2 2022.10 support to Ampliseq
#664
MatthewJM96
closed
11 months ago
1
Add blast-consensus support to Ampliseq
#663
MatthewJM96
opened
12 months ago
1
Phyloseq object creation will fail if any samples have all reads removed by the tax filtering step
#662
agrier-wcm
closed
1 year ago
5
Bump version 2.7.1 to 2.8.0dev
#661
d4straub
closed
1 year ago
5
Release 2.7.1
#660
d4straub
closed
1 year ago
2
Prepare release 2.7.1
#659
d4straub
closed
1 year ago
1
Adding the new Greengenes2 database for classification
#658
aimirza
opened
1 year ago
19
Improve reporting
#657
d4straub
closed
1 year ago
1
Move conda check to script section
#656
d4straub
closed
1 year ago
2
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