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BMT can be slow, and the ontology used at creation of a BioCypher KG should be backed up. We could serialise the ontology structure to be saved and versioned alongside the actual KG; could also go int…
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After `poetry install` of the latest CROssBAR adapter version (pypath v14.16 as per `poetry.lock` file), I am getting the following error:
```
Traceback (most recent call last):
File "/Users/sl…
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E.g. in the tum-bc pipeline
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Hi,
After upgrading pypath to latest version through pip, I got following error:
```
Traceback (most recent call last):
File "d:\crossbar\CROssBAR-Data-Process\uniprot data\biocypher_uniprot_pro…
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To make BioCypher more snappy, create a cache of the Biolink model as created/extended by a BC project. Should only be updated if the schema config changes or the "shelf life" of the cache is exceeded…
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Require distinct
- licence
- provenance (source)
- version
- identifier
- etc?
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Add functionality to translate between original data labels and BioCypher labels to allow for legacy support of terms and queries
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Hi Charlie,
The example IDs for MINT (https://bioregistry.io/reference/mint:MINT-10000) and intact.molecule (https://bioregistry.io/reference/intact.molecule:EBI-366083) do not resolve. MINT links le…
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Biolink provides instructions for implementation inside a property graph (https://biolink.github.io/biolink-model/about/mapping-neo4j.html), but these are very restrictive.
For one, nodes in the gr…
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There is a broken link named as **PyPath adapter** at [BioCypher Landing page](https://saezlab.github.io/BioCypher/#the-host-module-adapter) under the host Module Adapter title. I think it should be c…