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saezlab
/
pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
http://omnipathdb.org/
GNU General Public License v3.0
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Corrected index_info msg call to fix single quote confusion
#298
maca8e
closed
2 weeks ago
0
SyntaxError: f-string: unmatched '['
#297
maca8e
closed
2 weeks ago
2
pypath logging results in AttributeError during ramp db calls
#296
maca8e
closed
2 weeks ago
2
Server is down
#295
nilcam
closed
1 month ago
1
omnipathdb.org: 500 Internal Server Error
#294
AtanasiuDemian
closed
1 month ago
1
NameError: name '_const' is not defined
#293
RicoBorra
opened
7 months ago
1
Failed to import mapping from pypath.utils
#292
mauripops
opened
8 months ago
0
Typo in _all_uniprot
#291
dbdimitrov
closed
1 week ago
1
error: Error -3 while decompressing data: invalid code lengths set
#290
Ryeeeeeeeeee
closed
1 month ago
7
Can't import the core module
#289
xiangpin
opened
8 months ago
1
Circular Import errors on the latest version
#288
austinv11
opened
8 months ago
0
Unable to load Omnipath
#287
alberto-valdeolivas
closed
8 months ago
4
Bump jupyter-lsp from 2.2.0 to 2.2.2
#286
dependabot[bot]
closed
9 months ago
1
Bump jupyterlab from 4.0.9 to 4.0.11
#285
dependabot[bot]
closed
9 months ago
1
Bump pillow from 10.1.0 to 10.2.0
#284
dependabot[bot]
closed
9 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3
#283
dependabot[bot]
closed
9 months ago
1
Bump cryptography from 41.0.5 to 42.0.2
#282
dependabot[bot]
closed
9 months ago
1
Update cellphonedb.py
#281
npalacioescat
closed
9 months ago
1
Update CellChatDB URL
#280
npalacioescat
closed
9 months ago
0
Fixed error retrieving boolean annotations
#279
npalacioescat
closed
9 months ago
0
Cannot retrieve progeny weights for mouse: url for homologene needs to be updated
#278
ruhisayana
opened
9 months ago
4
AttributeError: module 'pypath.share.common' has no attribute 'DATA'
#277
mcjmigdal
closed
9 months ago
2
Bump paramiko from 3.3.1 to 3.4.0
#276
dependabot[bot]
closed
9 months ago
1
Trouble importing and accessing omnipath from pypath
#275
hcl1216
opened
11 months ago
13
NicheNet LR prior knowledge
#274
dbdimitrov
opened
11 months ago
0
Bump jupyter-server from 2.11.0 to 2.11.2
#273
dependabot[bot]
closed
9 months ago
1
CellChatDB Update
#272
dbdimitrov
closed
9 months ago
0
ICELLNET Update
#271
dbdimitrov
closed
9 months ago
2
Bump cryptography from 41.0.5 to 41.0.6
#270
dependabot[bot]
closed
9 months ago
1
CellPhoneDB v5 (update and is_ppi flag)
#269
dbdimitrov
opened
1 year ago
13
Interested in an RSE position?
#268
iulusoy
closed
10 months ago
0
`string` url update
#267
bnymnsen
closed
1 year ago
0
Bump urllib3 from 2.0.5 to 2.0.7
#266
dependabot[bot]
closed
1 year ago
1
Bump urllib3 from 2.0.5 to 2.0.6
#265
dependabot[bot]
closed
1 year ago
1
fix: `trrust_mouse`
#264
MelihDarcanxyz
closed
1 year ago
1
Bump cryptography from 40.0.2 to 41.0.4
#263
dependabot[bot]
closed
1 year ago
1
Database (partially?) down
#262
pokedthefrog
closed
1 year ago
1
Bump jupyter-server from 2.5.0 to 2.7.2
#261
dependabot[bot]
closed
1 year ago
1
`ddinter.py` error fix
#260
bnymnsen
closed
1 year ago
0
Mapping Yeast Uniprot/GeneSymbol/ORF issues
#259
alexandre239
opened
1 year ago
0
Bump tornado from 6.3.1 to 6.3.3
#258
dependabot[bot]
closed
1 year ago
1
Cannot import mapping
#257
ivanovaos
closed
1 year ago
3
Bump cryptography from 40.0.2 to 41.0.3
#254
dependabot[bot]
closed
1 year ago
1
GO data retrieval gets stuck on page 670
#253
ghost
opened
1 year ago
0
Bump certifi from 2023.5.7 to 2023.7.22
#252
dependabot[bot]
closed
1 year ago
1
Bump cryptography from 40.0.2 to 41.0.2
#251
dependabot[bot]
closed
1 year ago
1
DrugCombDB support
#250
mert-ergun
closed
1 year ago
0
Conflict when merging evidences
#249
marcorusc
opened
1 year ago
0
`ValueError: I/O operation on closed file` in `mapping.py`
#248
bnymnsen
opened
1 year ago
1
Adrecs and Sider new functions
#247
mert-ergun
closed
1 year ago
0
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