-
Hi!
I tried PIME package using this pipeline:
```
pime.oob.error(phyloseq, "phenotype")
phy_BrDi
-
Hi there,Do I need full-length transcripts to use ESPRESSO? For example, if the reads are not full-length, do they need to be filtered out?
Why do different positions of the same transcript support d…
-
Hi there,
I browsed your interesting [paper](https://doi.org/10.1093/nar/gkad158) (that isnt mentioned in the README) and was intrigued by the speed improvement while promising a similar performanc…
-
Everything was working fine but now the plot.ordination function is showing the following error:
`plot.ordination(ord.res2, method="PCoA", pvalue.cutoff=0.05, show.pvalues=T)`
`Error in ordiellips…
-
I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file
-
Reply with learning objectives (and challenges to test them, if possible).
-
Hi there, thanks for sharing this tool! It worked really well with my data after checking the PCoA plot. I have two questions regarding the downstream analysis though:
1. After using the tool and n…
-
Hi,
I have some results I cannot really explain when looking at the raw pvalue distribution.
Here is my framework from the csaw book ;
```
param
-
Hello. I receive an error when loading my metadata for the analysis. My metadata is perfectly okay.
Here is my metadata
sample_name TB_history
P01-A01-HLM069 0
P01-A02-HLM002 0
P01-A03-HLM03…
-
Hi there,
I have been trying to use the Stringtie-ballgown pipeline to conduct a differential expression analysis of the isoforms.
So here is the overview procedures I have taken:
1. Strin…