Xinglab espresso issues

Xinglab / espresso

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Optimal number of threads to run ESPRESSO_C with samples 10-25M reads

#61 pclavell opened 55 minutes ago
0
Where to find the splice junctions of annotated isoforms from the annotation?

#60 LilyLuyang opened 1 week ago
2
'Exiting due to error in worker thread' and sorting sam file related issue

#59 kwonej0617 closed 2 weeks ago
1
how to define full-length transcript

#58 junjiemama opened 2 weeks ago
2
error with run test

#57 Xing-2024 opened 3 weeks ago
3
ESPRESSO test not working with 112 threads

#56 pclavell opened 3 weeks ago
4
Error in running espresso

#55 zhangkn3 closed 1 month ago
10
the number of genes decreased

#54 Yumy526 opened 1 month ago
1
Error with ESPRESSO_C

#53 Oliverfeudj opened 1 month ago
3
strange error ESPRESSO_S.pl

#52 Yumy526 closed 1 month ago
10
Error running ESPRESSO_C

#51 Oliverfeudj closed 1 month ago
6
Detecting isoforms with unannotated exon

#50 yichao-cai closed 2 months ago
1
Thread terminated abnormally for ESPRESSO_Q

#49 shiny-prize closed 4 months ago
2
Sequence fasta file corresponding to the final output GTF file

#48 seongwoohan opened 4 months ago
1
how are reads filtered?

#47 YichaoOU closed 4 months ago
2
Conda installation

#46 LPChaumont closed 5 months ago
4
Out of memory

#45 Jean497 opened 5 months ago
2
run test errors

#44 Jean497 opened 5 months ago
1
The use of espresso

#43 junjiemama opened 7 months ago
2
Handling ‘NA’ Gene IDs and Annotation of GTF Files in ESPRESSO

#42 yycc9897 opened 7 months ago
1
Headers for `sj_list` `chr*_SJ_simplified.list`

#41 sridhar0605 closed 8 months ago
2
Check if there are any single exon isoforms before sorting

#40 EricKutschera closed 8 months ago
1
The threads issue for ESPRESSO_Q

#39 bingqiWu opened 8 months ago
1
Update to version 1.4.0

#38 EricKutschera closed 8 months ago
0
Understand the meaning of Espresso SJ output

#37 junjiemama closed 8 months ago
2
Mapping to transcriptome reference

#36 vetmohit89 closed 8 months ago
1
Filter reads missing full sequence in S step

#35 EricKutschera closed 10 months ago
1
Thread 1 terminated abnormally for ESPRESSO_C.pl

#34 MSQ-123 closed 10 months ago
5
Thread terminated abnormally

#33 MSQ-123 closed 10 months ago
2
Requantify isoforms after filtering

#32 chrisamiller closed 8 months ago
3
How to filter the novel isoform in samples_N2_R0_abundance.esp file?

#31 kir1to455 closed 8 months ago
1
ESPRESSO_S out of memory！

#30 kir1to455 closed 10 months ago
3
Estimate time cost for ESPRESSO_C

#29 chenxran opened 10 months ago
13
compare AS events identified from rmats with espresso transcripts

#28 yuejun-j-wang closed 8 months ago
1
Use case-sensitive sort for bedgraph in visualization

#27 EricKutschera closed 11 months ago
1
Subprocess.CalledProcessError: Command "bedGraphToBigWig"

#26 YANG-Jiwei closed 11 months ago
4
Reference fasta file

#25 vetmohit89 closed 10 months ago
5
System sort commands run out of memory

#24 chrisamiller closed 8 months ago
2
Simulated Dataset in the ESPRESSO paper

#23 zzare-umd closed 10 months ago
1
Ensembl b38 HLA error.

#22 sridhar0605 opened 1 year ago
3
Update to version 1.3.2

#21 EricKutschera closed 1 year ago
0
some questions about Visualization

#20 whatabear closed 1 year ago
0
Time taken by ESPRESSO_C.pl

#19 ashokpatowary closed 1 year ago
4
Espresso quantification without identification

#18 zzare-umd closed 10 months ago
1
ESPRESSO_C.pl error

#17 yuejun-j-wang closed 10 months ago
7
Add link for bioconda package

#16 EricKutschera closed 1 year ago
0
Update to version 1.3.1

#15 EricKutschera closed 1 year ago
0
Create sam matching espresso annotations

#14 joegeorgeson opened 1 year ago
3
Thread termination in line 865 of ESPRESSO_S.pl

#13 jamesoccean closed 10 months ago
2
Issue with reference FASTA file in running ESPRESSO_S.pl

#12 jamesoccean closed 1 year ago
2