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espresso
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could not load Parasail module needed for Smith-Waterman
#80
maronem
opened
1 week ago
3
could not load Parasail module needed for Smith-Waterman
#79
border-info-nt
opened
1 week ago
3
Unclear output from ESPRESSO_Q summary.txt
#78
pclavell
opened
3 weeks ago
3
ESPRESSO_Q.pl did not get the compatible_isoform.tsv file after running it.
#77
happypiggyzjx
closed
1 month ago
1
No valid read_final.txt can be found.
#76
happypiggyzjx
closed
1 month ago
2
The ESPRESSO_S.pl output is a bit strange.
#75
happypiggyzjx
closed
2 months ago
2
Problems when running ESPRESSO_C.pl ，trying to run the snakemake workflow also has problems.
#74
happypiggyzjx
closed
1 month ago
4
361 killed in ESPRESSO_C.pl
#73
bingqiWu
closed
2 months ago
4
error with create_corrected_sam.py
#72
junior-2016
closed
3 months ago
2
collapsed isoforms
#71
trista1115
closed
1 month ago
24
Remove .gz from fasta_name in snakemake_config.yaml
#70
EricKutschera
closed
3 months ago
0
reference for this pipeline
#69
mlpy18
opened
3 months ago
1
Add make to Dockerfile
#68
EricKutschera
closed
3 months ago
0
Update to version 1.5.0
#67
EricKutschera
closed
3 months ago
0
Transcripts support different numbers of reads
#66
liuxiaoning-wq
opened
4 months ago
14
chr name not recognized
#65
olazaro-ibri
closed
3 months ago
2
novel isoform not detected and all transcript have only one exon
#64
bingqiWu
closed
3 months ago
5
How to find the support reads of novel isoform
#63
mlpy18
closed
3 months ago
2
Novel isoform not detected
#62
stfacc
opened
4 months ago
3
Optimal number of threads to run ESPRESSO_C with samples 10-25M reads
#61
pclavell
closed
4 months ago
3
Where to find the splice junctions of annotated isoforms from the annotation?
#60
LilyLuyang
closed
3 months ago
2
'Exiting due to error in worker thread' and sorting sam file related issue
#59
kwonej0617
closed
5 months ago
1
how to define full-length transcript
#58
junjiemama
closed
3 months ago
2
error with run test
#57
Xing-2024
closed
3 months ago
5
ESPRESSO test not working with 112 threads
#56
pclavell
opened
5 months ago
4
Error in running espresso
#55
zhangkn3
closed
5 months ago
10
the number of genes decreased
#54
Yumy526
closed
3 months ago
1
Error with ESPRESSO_C
#53
Oliverfeudj
closed
3 months ago
3
strange error ESPRESSO_S.pl
#52
Yumy526
closed
6 months ago
10
Error running ESPRESSO_C
#51
Oliverfeudj
closed
6 months ago
6
Detecting isoforms with unannotated exon
#50
yichao-cai
closed
7 months ago
1
Thread terminated abnormally for ESPRESSO_Q
#49
shiny-prize
closed
8 months ago
2
Sequence fasta file corresponding to the final output GTF file
#48
seongwoohan
closed
3 months ago
1
how are reads filtered?
#47
YichaoOU
closed
9 months ago
2
Conda installation
#46
LPChaumont
closed
10 months ago
4
Out of memory
#45
Jean497
opened
10 months ago
2
run test errors
#44
Jean497
closed
3 months ago
1
The use of espresso
#43
junjiemama
closed
3 months ago
2
Handling ‘NA’ Gene IDs and Annotation of GTF Files in ESPRESSO
#42
yycc9897
opened
12 months ago
1
Headers for `sj_list` `chr*_SJ_simplified.list`
#41
sridhar0605
closed
1 year ago
2
Check if there are any single exon isoforms before sorting
#40
EricKutschera
closed
1 year ago
1
The threads issue for ESPRESSO_Q
#39
bingqiWu
closed
3 months ago
2
Update to version 1.4.0
#38
EricKutschera
closed
1 year ago
0
Understand the meaning of Espresso SJ output
#37
junjiemama
closed
1 year ago
2
Mapping to transcriptome reference
#36
vetmohit89
closed
1 year ago
1
Filter reads missing full sequence in S step
#35
EricKutschera
closed
1 year ago
1
Thread 1 terminated abnormally for ESPRESSO_C.pl
#34
MSQ-123
closed
1 year ago
5
Thread terminated abnormally
#33
MSQ-123
closed
1 year ago
2
Requantify isoforms after filtering
#32
chrisamiller
closed
1 year ago
3
How to filter the novel isoform in samples_N2_R0_abundance.esp file?
#31
kir1to455
closed
1 year ago
1
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