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See: https://github.com/pombase/canto/issues/1830#issuecomment-590839270
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Canto is supposed to prevent genes being removed from the session if they're used in a genotype or an annotation. For physical interactions, this protection only applies to 'Interactor A' of the inter…
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(May be very ambitious, thus putting it up for discussion)
There would be massive time savings if one could make 'bulk' annotations. I.e. make in one go the same phenotype annotation to multiple al…
vmt25 updated
4 years ago
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We can do this in PomBase Canto. It's a nice way to check that the phenotypes to a genotype align across experiments in a long table.
It is difficult to implement in PHI-Canto because the multisp…
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from https://github.com/PHI-base/canto/issues/7
from
https://github.com/pombase/canto/issues/1359
PHI base need to be able to specify WT gene and product level for some WT alleles when compari…
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Also edit
PECO:0005029 tobacco host assay ->
heterologous species tobacco
4477353
After today's meeting with @ValWood we decided to move 'heterologous species' out of 'evidence' and into 'condi…
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In order to understand which interaction record is being refuted by EOL validation rules, we need to reference the refuted data record somehow.
Because existing datasets apply various ways (or no …
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The current definition for the term only incorporates mutualism, commensalism, and parasitism, while we're including all interspecies interactions under the term. Therefore, we should either remove th…
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BACKGROUND: Strictly speaking, Foundry designation has one real purpose: to indicate which of the (possibly several) ontologies in a given domain should be the point of 'convergence' (that is, referen…
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hi @arw36 - I took some time to review the data files associations.csv, references.txt, hosts.csv and viruses.csv. In associations.csv short citations are mentioned (e.g., Alexander et al. 1994), but …