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**Desired Change**
Provide imputation functions with criteria to impute the missing data, e.g. mean, lowest, highest, etc.
**Additional Info**
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We've encountered some unexpected behaviour at a position where many of the samples have a deletion, and so have null genotype calls in the VCF file. Could you please advise?
The position is Spike …
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Hi, I am researching the papers related to interpolation, and your GitHub is very helpful to me.
I would like to ask what is the difference between interpolation and imputation? One is the spatial d…
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Multilevel imputation does not appear to accept a character or factor variable as the cluster variable. It appears that the cluster variable must be integer. Note, when using `2l.pmm`/`miceadds`, I re…
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## Description
Even after https://github.com/pymc-devs/pymc3/pull/4439 imputations don't work in combination with `pm.Data`.
This is because `pm.Data` creates a `SharedVariable` that currently does …
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Dear developers,
I found that in my dataset around 20% of probes are NA in 10% or less of the samples (different samples after general QC). Is there a way to impute the missing values with Seasame?…
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### Description
Median imputation is less popular than mean imputation but still quite popular, e.g. 28,400 Google results for "median imputation" in quotes vs 126,000 for "mean imputation" in quotes…
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We want to test some specific examples against the new backward matrix code in #2799. To be certain that we're interpreting the model correctly, we can output the forward and backward matrices from Be…
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Hi!
I have been trying to use the package "missForest" to impute the missing values in our dataset for a while. However, I keep getting the same error. Moreover, I also tried to use the package "mice…
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### To Do List:
- [x] filter the fam file for only eur based on the file of `EUGEI_GROUP_EuroOnly_PCs_NonRefPanel_Dec17.txt`
- [ ] only 794 left
- [ ] the third column of the bim file (Position i…