zwdzwd sesame issues - Githubissues

zwdzwd / sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

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Fix impute.R by replacing all instances of df$data with df

#189 bethan-mallabar-rimmer opened 4 hours ago
0
Cannot infer sex for more than one sample?

#187 tedichh closed 3 weeks ago
1
Allow platform inference to be more sensitive

#186 njspix opened 3 weeks ago
0
Error in openSesame()

#184 RosyGH opened 1 month ago
1
error with predictAge()

#183 stro0070 opened 1 month ago
0
Odd behavior with two variables

#180 nick-webster opened 2 months ago
0
Bug in sesameQC_plotBar(qcs, keys = NULL)

#177 qslin opened 2 months ago
0
Missing Control Probes

#176 nanabgh1 opened 3 months ago
8
BiocParallel errors in SeSaMe during DML calculation

#175 TPlatek opened 3 months ago
0
EPIC.1.LNCaP missing from sesameData.

#174 simonjuleseric2 opened 4 months ago
3
sesameDataCache() optimization

#173 JBinkowski closed 4 months ago
4
Missing EPICv2.8.SigDF (EH8554) in sesameData

#172 egirard1 opened 4 months ago
1
Age prediction

#171 cbakoo opened 5 months ago
0
sesame/sesamize Error: could not find function "pkgTest"

#170 altuda opened 5 months ago
0
Help with running the pipeline directly on beta matrix from TCGA

#169 pallavisurana1 opened 5 months ago
0
Can beta values be normalized for random effects?

#168 ChromPerson opened 6 months ago
0
opensesame() behind the scene

#165 altuda closed 6 months ago
2
Error in SesameDataCache()

#164 arualemsti opened 6 months ago
6
Error in normalize.quantiles.use.target(matrix(IR1), as.vector(IG0)) : ERROR; return code from pthread_create() is 22

#163 OberhammerF opened 6 months ago
2
sesameDataGet("KYCG.HM450.Mask.20220123")$recommended has NA value

#162 maximilian-leitheiser opened 6 months ago
1
Problems between matching between the "probe_strand" annotation in EPICv2 and previous EPICv1 manifest

#161 rauldiul opened 6 months ago
0
Documentation on what the different listAvailableMasks("EPICv2") are (& how they are derived + recommended use)

#160 KC-UK closed 7 months ago
8
Background correction with noobsb

#159 CGerhauser opened 7 months ago
3
How to solve problem with error : $ operator is invalid for atomic vectors?

#158 TPlatek opened 7 months ago
3
ExperimentHub Caching Fails For sesameDataCache()

#157 yr542 opened 7 months ago
0
Typo in mLiftOver biorxiv paper about needed SeSAMe version

#156 jdreyf closed 7 months ago
1
openSesame func = NULL issue

#155 JBinkowski closed 7 months ago
1
Error in stopAndCache(title) when reading in EPIC v1 and v2 Idat files

#154 siridandu opened 8 months ago
4
Bean Count QC analysis in SeSame?

#153 WalterPavicic opened 8 months ago
6
Error using predictedAge

#152 WalterPavicic opened 8 months ago
1
Can't find Clock_Zhou347.rds

#151 caitsimop opened 9 months ago
4
Is sesame modeling beta or log(beta/(1-beta))?

#150 alanlamsiu closed 9 months ago
1
how do i find out which human genome is used in cnSegmentation

#149 claus-h-g opened 9 months ago
0
Custom human methylation array

#148 demis001 opened 9 months ago
0
Help with 'estimateCellComposition'

#147 pmishra912 opened 10 months ago
0
Sesame Data Package License Missing

#146 deryannis closed 10 months ago
1
sesameDataCache() fails with no error

#145 bethan-mallabar-rimmer opened 10 months ago
20
obtaining bioparallel error after running the SigDFsToRGChannelSet function

#144 tamefelis opened 10 months ago
0
cnSegmentation for EPICv2 data

#143 SteffanChristiansen opened 10 months ago
6
Support for Mammal320k array?

#142 andrewjkwok opened 10 months ago
0
bisConversionControl - platform naming mismatch "EPICv2" vs "EPICplus"

#141 bethan-mallabar-rimmer opened 10 months ago
0
Sesame differential methylation mixed models / time series?

#140 andrewjkwok opened 10 months ago
2
openSesame() returned beta table with NA

#139 alanlamsiu closed 10 months ago
2
visualizeSegments plots chromosome label at chromosome midpoint rather than centromere

#138 j-andrews7 opened 10 months ago
4
sesameDataCache() ERROR: ExperimentHub Caching fails

#137 hicihee opened 10 months ago
1
Return probe values from cnSegmentation

#136 j-andrews7 closed 10 months ago
4
testEnrichmentFisher function help

#135 ardan33 opened 11 months ago
1
Error with openSesame

#134 ardan33 closed 11 months ago
2
Specify platform for readIDATpair()

#133 alanlamsiu closed 10 months ago
3
Unexpected result from formatVCF()

#132 alanlamsiu closed 10 months ago
3