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sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
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fix spelling error in addMask docs
#131
karltk
closed
11 months ago
1
could not find function "SigSetsToRGChannelSet"
#130
yyuu33nn
opened
11 months ago
4
Where to look for normal data when using sesame for CNV analysis on EPIC v2?
#129
SixPlusSeven
opened
11 months ago
3
Which Variable name is used to handle illuminate ID
#128
claus-h-g
closed
10 months ago
4
Infer Sex function not working with epic v2?
#127
cbakoo
opened
11 months ago
5
Error with sesameDataCache()
#126
ardan33
closed
8 months ago
3
Trying to visualize probes using my beta matrix but having trouble
#125
arualemsti
opened
1 year ago
0
Grn IDAT does not exist
#124
mel-14
opened
1 year ago
1
cnSegmentation generated Error in lm.fit(x, y, offset = offset, singular.ok = singular.ok, ...) : 0 (non-NA) cases
#123
VivianBailey
opened
1 year ago
0
raw data imported with readIDATpair has NAs
#122
JoWhi
opened
1 year ago
0
can't create idat_dir
#121
marazzoli
opened
1 year ago
0
sesameDataCache() ExperimentHub Caching fails
#120
dvera
opened
1 year ago
11
Error when trying to plot intensities vs betas
#119
ardan33
closed
1 year ago
2
What is proper procedure?
#118
ardan33
closed
1 year ago
2
How to define identical copy number segments for human HM 450, EPIC V1 and EPIC V2 arrays
#117
claus-h-g
opened
1 year ago
2
Having trouble with background subtraction using oob on human samples.
#116
arualemsti
opened
1 year ago
2
Collapse beta values in EPIC v2 arrays with betasCollapseToPfx
#115
keenhl
opened
1 year ago
1
sesameDataCache() is incredibly slow when downloading the cache.
#114
SpikyClip
opened
1 year ago
0
Ubuntu 20 R console overcoming font issues and CNV plot constraints
#113
claus-h-g
closed
1 year ago
1
Parallel processing with BiocParallel in Slurm based cluster does not work with sesame functions.
#112
harrsha4
opened
1 year ago
1
Can SeSAMe work with EPICv2 data now?
#111
HuaLing1
opened
1 year ago
3
Imputation of missing beta values
#109
andreyurch
opened
1 year ago
1
Confusion regarding the recommended masks for EPICv2
#108
JiaweiDai-create
opened
1 year ago
0
EPICplus and EPICv2.probeInfo in v1.18.4
#107
rcavalcante
opened
1 year ago
0
New Horvath age computation gives higher values than deprecated function predictAgeHorvath353 for EPIC v1 samples
#106
oliemery
opened
1 year ago
5
Problem in readIDATpair when including controls
#105
oliemery
opened
1 year ago
0
Error in openSesame: reducer$value.cache[[as.character(idx)]] <- values : wrong args for environment subassignment
#104
skatrinli
opened
1 year ago
0
bisConversionControl for EPICv2
#103
lissettegomez
opened
1 year ago
3
Questions about the output for DMR
#102
DKaukonen
opened
1 year ago
4
predictAgePheno error message
#101
Jmase0921
opened
1 year ago
0
Infinium Mouse Methylation, 'attachManifest()' does no exist
#100
mininicovd
opened
1 year ago
2
Error for sesameDataGet with sesame 1.17.11 and sesameData 1.17.8
#99
yang050036
opened
1 year ago
8
probe type BMIQ Normalization
#98
Oluwatobiloba98
opened
1 year ago
0
Error loading in idat files
#97
Jmase0921
opened
1 year ago
1
DML Error "variable lengths differ found for X.Intercept
#96
DKaukonen
closed
1 year ago
1
Questions About Running Differential Methylation Analysis on Paired Samples
#95
DKaukonen
opened
1 year ago
0
DML: sample names not used, order in beta and meta must match
#94
abenjak
closed
1 year ago
3
ERROR: values must be length 1, but FUN(X[[12]]) result in length 0
#93
neverseverette
opened
1 year ago
4
sesameDataGet doesn't work for Epic V2
#92
jzou1115
closed
1 year ago
6
Error in readIDATpair: idatSignature does not exist
#91
Oluwatobiloba98
opened
1 year ago
2
add names to DB list (KYCG_loadDBs())
#90
golddc
opened
1 year ago
0
update summaryExtractTest function to return probeIDs for continuous …
#89
golddc
closed
1 year ago
0
Error in dyeBiasCorr(sset) : is(sdf, "SigDF") is not TRUE
#88
Barbarak17
opened
1 year ago
0
Issue about sesameData 1.17
#87
jackytao18
opened
1 year ago
8
RGdistort
#86
taylorcpatch
opened
1 year ago
0
'Error in stopAndCache(title) : File EPIC.address needs to be cached to be used in sesame' - but file is listed in sesameDataList
#85
jhawe
opened
2 years ago
1
openSesame - unused arguments ("KYCG", full = TRUE) error
#84
jhawe
opened
2 years ago
1
added replace.probes.with.loci option (new default)
#83
Pancreas-Pratik
closed
2 years ago
0
Code for generating genomeInfo.mm10$txns?
#82
Pancreas-Pratik
closed
2 years ago
3
Where can I got the file 'Clock_Horvath353.rds'
#81
liuyang2006
opened
2 years ago
0
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