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https://dev.azure.com/themartinsteinegger/mmseqs2/_build/results?buildId=813&view=logs&j=b6ebde74-a63b-50c4-676d-2e6c6772f234&t=c2a39823-bf84-5acf-9756-8c6ab4c824a2&l=351
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## Expected Behavior
Set RAM to 1.4T as specified by `--split-memory-limit 1400G`
## Current Behavior
MMseqs set the limit to only 1T RAM
## Steps to Reproduce (for bugs)
I set `--split-memory-li…
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## Expected Behavior--
I am clustering NGS sequences with linclust (using the createdb database) from protein fasta files incorporating multiple named barcodes present in the fasta IDs. Each ID con…
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Dear Silas, thank you for putting together a great pipeline. Running a test on my data - got the following issue:
[Mon Jul 6 19:09:53 2020]
Finished job 35.
147 of 211 steps (70%) done
[Mon J…
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## Information
Hi,
I am a bit confused with the MMseqs2 suite modules.
If I understood correctly:
- when I do `mmseqs search args`, it uses the algorithm described in https://www.nature.co…
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Hi,
I am trying to set up atlas in our server.
I performed a testrun with example files provided, i am running into an error (pasted below), i am not able to fix it. Can you please help. i edited …
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## Expected Behavior
mmseqs2 successfully linclust a 49 sequence protein fasta
## Current Behavior
mmseqs2 complain Kmer array overflow
## Steps to Reproduce (for bugs)
```bash
~/seqdb/JGI/s…
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Hi,
I have quite a big number of protein sequences that I want to cluster. I tried to cluster them together, it didn't work out (I don't know if size was the issue, but I was in a hurry), so I spli…
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HI, I am getting some memory errors when running the cluster module. The amount of memory I have on my cluster is 100GB and the number of threads is 8. When I run the cluster command as below
`mmse…
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Hello.
We want to crete a fasta file with all MSA of each cluster.
I previous version wa can do it with.
linclust -> result2msa -> result2flat
And it worked perfectly. In new versions resu…