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metagenome-atlas
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atlas
ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
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feat: GTDB v9 Refseq 220
#730
SilasK
closed
2 weeks ago
0
chore(main): release 2.18.2
#729
github-actions[bot]
closed
2 weeks ago
1
chore(master): release 2.18.2
#728
github-actions[bot]
closed
2 weeks ago
0
Fix dram
#727
SilasK
closed
2 weeks ago
0
Use kingfisher for public init
#726
SilasK
opened
2 weeks ago
0
Gtdb v9
#725
SilasK
opened
2 weeks ago
0
Snake8
#723
SilasK
opened
1 month ago
0
Error in rule build_qc_report: ModuleNotFoundError: No module named 'numpy._version'
#722
the-eon-flux
closed
1 month ago
2
Support for highly accurate long reads?
#721
MrTomRod
closed
3 weeks ago
1
What does "max" in the combined_contig_stats.tsv mean?
#720
s-junguy
closed
2 months ago
1
plans for supporting fungi
#719
jotech
opened
2 months ago
5
Error during DRAM download; processing vogdb
#718
abarilo
closed
2 weeks ago
6
Error in rule get_bins: only 1 conting found in samples
#717
anbadilla
closed
3 months ago
0
Update multiqc wrapper to newest version.
#714
njohner
closed
4 months ago
1
Correction of typos
#713
Waschina
closed
5 months ago
3
Public init v2
#712
mortonjt
opened
6 months ago
0
MissingOutputException
#710
topfm
closed
7 months ago
2
Error in rule run_spades
#708
s-junguy
closed
7 months ago
19
Error in rule
#707
yustinus1
closed
5 months ago
5
Disk_mem not sufficient
#706
SilasK
closed
8 months ago
6
Run atlas genomes without the taxonomy output
#705
AnneliektH
closed
8 months ago
2
atlas init-public no such command
#704
claireewilliams
closed
3 months ago
2
Creating envs (--conda-create-envs-only) is running without error, but not creating envs
#703
LLansing
closed
8 months ago
1
Error in rule multiqc_mapping_genome due to incontability with python 3.12
#702
valery-shap
closed
5 months ago
13
Setting eggNOG_use_virtual_disk to true
#701
Roxy-mzh
closed
8 months ago
4
atlas downdload fail
#700
jowodo
closed
8 months ago
6
Ci opt
#699
SilasK
closed
9 months ago
0
Error in localrule parse_vamb_output:
#698
the-eon-flux
closed
8 months ago
5
Qc reads from init not in qc reads
#697
SilasK
closed
9 months ago
0
atlas metatranscriptome data - MissingOutputException in rule run_spades
#696
jilldv
closed
9 months ago
19
NaNs in samples.tsv
#695
AroArz
closed
9 months ago
6
Error in rule run_vamb
#693
AroArz
closed
10 months ago
2
Error in rule
#692
bbagy
closed
5 months ago
11
I am alway stuck at 3% done
#691
Patcha-pou
closed
8 months ago
2
Process for determining % of data binned?
#690
maggieweng
closed
8 months ago
2
genome_filter_criteria is printed on two lines
#689
SilasK
closed
6 months ago
1
Question about co-binning behavior
#688
mladen5000
closed
8 months ago
8
Output directory
#687
susheelbhanu
closed
11 months ago
2
Error in rule
#686
robbueck
closed
11 months ago
2
Error in rule rename_genomes
#685
XC-Zhai
closed
11 months ago
10
Seperate sampletable in new smk
#684
SilasK
closed
11 months ago
0
Enable running cobinning on different bingroups
#683
SilasK
closed
11 months ago
0
ci: use micromamba
#682
SilasK
closed
12 months ago
0
Convert mem_mb value from gb to mb for select rules
#681
LLansing
closed
12 months ago
1
Reuse existing genome taxonomy database (gtdb) when installing conda environments
#680
jotech
closed
12 months ago
2
Fixed pandas dependency for instrain
#678
mladen5000
closed
1 year ago
1
Define default resources
#676
SilasK
closed
5 months ago
15
download wrapper on head node
#675
jotech
closed
10 months ago
8
Added certificate for gtdb_v08
#674
mladen5000
closed
1 year ago
0
Error in rule download_gtdb
#673
mladen5000
closed
1 year ago
1
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