issues
search
metagenome-atlas
/
atlas
ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
364
stars
97
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Fixed pandas dependency for instrain
#678
mladen5000
closed
1 year ago
1
Define default resources
#676
SilasK
closed
7 months ago
15
download wrapper on head node
#675
jotech
closed
11 months ago
8
Added certificate for gtdb_v08
#674
mladen5000
closed
1 year ago
0
Error in rule download_gtdb
#673
mladen5000
closed
1 year ago
1
skani parameter usage in atlas derep
#672
bluenote-1577
closed
1 year ago
2
Move config folder outside
#671
SilasK
closed
1 year ago
0
ci: store genecatalog envs
#669
SilasK
closed
1 year ago
0
Error in rule rule apply_quality_filter
#668
jotech
closed
1 year ago
8
Improvement of offline cluster mode
#667
jotech
closed
1 year ago
1
Improvement of offline cluster mode
#666
jotech
closed
1 year ago
2
Error in rule run_das_tool for test
#665
XC-Zhai
closed
1 year ago
5
Error in rule dram_download
#664
jotech
closed
1 year ago
21
Genome dereplication using skani
#663
SilasK
closed
1 year ago
1
clean up
#662
slambrechts
closed
1 year ago
3
Fixed error in rule combine_egg_nogg_annotations:
#661
mladen5000
closed
1 year ago
2
Patch 1
#660
SilasK
closed
1 year ago
0
specify config file directly to dram
#658
johnne
closed
1 year ago
2
checmk2 ERROR: DIAMOND database not found
#657
JustinGibbons
closed
1 year ago
7
Neweggnog
#656
SilasK
closed
1 year ago
0
Error in rule get_all_modules
#655
mladen5000
closed
1 year ago
12
Error in rule DRAM_destill
#654
mladen5000
closed
1 year ago
1
Error in rule combine_egg_nogg_annotations
#653
mladen5000
closed
1 year ago
2
Add missing concoct environment file
#652
johnne
closed
1 year ago
1
Progressing despite individual binner failure
#651
mladen5000
opened
1 year ago
3
Don't use map quality filtering in binning
#650
johnne
closed
1 year ago
2
fixed typo
#649
strejcem
closed
1 year ago
3
gtdb v8
#648
SilasK
closed
1 year ago
0
Use minimum mapping quality in pileup
#647
johnne
closed
1 year ago
1
WorkflowError: Failed to obtain job status.
#646
irvinng98
closed
1 year ago
5
Error in rule get_read_stats and run_decontamination during run qc
#645
lineroager
closed
1 year ago
4
docs: update gene catalog
#643
SilasK
closed
1 year ago
0
fix gene_info.parquet
#642
SilasK
closed
1 year ago
0
fix errors_due to pie
#641
SilasK
closed
1 year ago
0
median_coverage.h5 ERROR
#640
luozhy88
closed
1 year ago
4
UPDATE GIHUB WORKFLOW
#639
SilasK
closed
1 year ago
0
use cache package
#638
SilasK
closed
1 year ago
0
Update python-package-conda.yml
#637
SilasK
closed
1 year ago
0
Error in rule apply_quality_filter
#635
johnne
closed
1 year ago
1
atlas init cannot find template_config.yaml
#634
johnne
closed
1 year ago
2
make gunc optional
#633
SilasK
closed
1 year ago
0
Dram on genecatalog
#632
SilasK
closed
1 year ago
0
Error in rule DRAM_destill
#631
mladen5000
closed
1 year ago
4
Error in rule concat_annotations
#630
mladen5000
closed
1 year ago
3
Updating gunc dependencies
#629
mladen5000
closed
1 year ago
0
Error in rule align_reads_to_final_contigs
#628
jilldv
closed
1 year ago
16
Error in rule download_gtdb
#627
claireewilliams
closed
1 year ago
1
Error in rule run_gunc
#626
mladen5000
closed
1 year ago
3
dRep issue - DataFrame.pivot
#625
mkardish
closed
1 year ago
2
Gene catalog in hadf but save also individual parquet files
#624
SilasK
closed
1 year ago
0
Previous
Next