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metagenome-atlas
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atlas
ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
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Gene catalog in hadf but save also individual parquet files
#624
SilasK
closed
1 year ago
0
Use Pyrodigal
#623
SilasK
opened
1 year ago
0
Semibin14
#622
SilasK
closed
1 year ago
0
Use hdfs for gene catalogs
#621
SilasK
closed
1 year ago
0
Error in rule metabat
#618
kmkappa
closed
1 year ago
11
Overview of the files in the genomes/counts folder.
#617
LeeBergstrand
closed
1 year ago
2
finding unmapped reads
#616
skeffington
closed
1 year ago
5
Make atlas better support metatranscriptome assembly
#615
SilasK
opened
1 year ago
1
Error in rule run_spades
#614
trickovicmatija
closed
1 year ago
2
set version of gtdbtk
#613
SilasK
closed
1 year ago
0
gtdbtk classify: error: one of the arguments --skip_ani_screen --mash_db is required
#612
JustinGibbons
closed
1 year ago
3
Error in rule get_read_stats & rule run_decontamination
#610
SinaZim
closed
1 year ago
1
Error with reports
#609
bheimbu
closed
1 year ago
2
Use optimal translation tables for gene prediction
#608
SilasK
closed
1 year ago
2
Suport for checkm2
#607
SilasK
closed
1 year ago
1
New branch to add checkm2
#606
SilasK
closed
1 year ago
0
Atlas 2.13 installation problem
#605
gaworj
closed
1 year ago
2
Error in rule run spades metatranscriptomes
#603
Sofie8
closed
1 year ago
0
Run aborted with error
#601
rjain1990
closed
1 year ago
3
Mapping statistics from pileup file is not reliable
#600
SilasK
closed
1 year ago
2
DAS_tool update, parser_bbmap.py error
#598
AroArz
closed
1 year ago
1
Unable to install Atlas 2.9
#597
rjain1990
closed
1 year ago
3
KO abundances
#594
LunavdL
closed
1 year ago
0
sortmeRNA for rRNA removal from metatranscriptomes
#593
trickovicmatija
closed
1 year ago
2
Error in rule root_tree and rule DRAM_set_db_loc
#592
HamzaMbareche
closed
1 year ago
2
Error in rule build_bin_report
#591
bioforkgithub
closed
1 year ago
8
Error in rule root_tree
#590
almutwerner
closed
1 year ago
1
Update semibin to v1.3
#589
philippbayer
closed
1 year ago
1
Error in rule semibin_predict_taxonomy: file exists, GTDB
#588
philippbayer
closed
1 year ago
6
Connda connection errors
#587
SilasK
closed
1 year ago
4
Error with atlas v2.13
#586
SilasK
closed
1 year ago
3
Error in atlas run assembly --ri: Couldn't resolve host name
#585
almutwerner
closed
1 year ago
1
Error in rule
#584
CynthiaChibani
closed
1 year ago
4
run_decontamination crash
#583
CMagnoBR
closed
1 year ago
4
Support for bwa mem2 for genomes
#582
SilasK
closed
1 year ago
1
Store CRAM files
#581
SilasK
closed
1 year ago
2
use Drep again
#579
SilasK
closed
1 year ago
0
Minimapgenomes
#578
SilasK
closed
1 year ago
0
use minimap2 for contigs
#577
SilasK
closed
1 year ago
1
List all installed tools and their licenses
#575
AlexanderBartholomaeus
closed
1 year ago
1
I installed the latest version of atlas and found this error when I run "atlas run qc"
#574
botellaflotante
closed
1 year ago
8
Specify bbsplit tool-specific memory parameter
#573
Waschina
closed
1 year ago
2
Error in rule
#572
arjun-1985
closed
1 year ago
2
Galah gieves weird results!
#570
SilasK
closed
1 year ago
0
use minimap for genomes
#569
SilasK
closed
1 year ago
0
filter genomes my self
#568
SilasK
closed
1 year ago
0
Dependency conflict while installing ATLAS 2.12.0
#567
jmtsuji
closed
1 year ago
4
Corrected small typo
#566
Waschina
closed
1 year ago
1
Error in rule combine_contig_stats
#565
farhadm1990
closed
1 year ago
8
Use new Dram version 1.4
#564
SilasK
closed
1 year ago
0
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