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metagenome-atlas
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atlas
ATLAS - Three commands to start analyzing your metagenome data
https://metagenome-atlas.github.io/
BSD 3-Clause "New" or "Revised" License
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Error in rule
#563
luozhy88
closed
1 year ago
3
Error_gtdb, dram_download
#562
bioforkgithub
closed
1 year ago
5
Exiting because a job execution failed.
#561
Justan6
closed
1 year ago
3
sbatch submission error with slurm
#560
farhadm1990
closed
1 year ago
4
Can this function be realized for atlas?
#559
luozhy88
closed
1 year ago
5
faster gene catalogs
#558
SilasK
closed
1 year ago
0
Bbsplit
#557
SilasK
closed
1 year ago
0
Bbsplit
#556
SilasK
closed
1 year ago
0
use bbsplit for mapping to genomes
#555
SilasK
closed
1 year ago
0
Distributed parquet matrix for very large genecatalogs
#554
SilasK
closed
1 year ago
0
screen
#553
SilasK
closed
1 year ago
0
use Galah instead of Drep
#552
SilasK
closed
2 years ago
0
GTDB-tk requires rule `extract_gtdb` to run first
#551
Waschina
closed
2 years ago
1
Expecting value: line 1 column 1 (char 0)
#550
SilasK
closed
2 years ago
1
atlas ,how to not bin?
#549
luozhy88
closed
2 years ago
15
Can this atlas analyze human metagenome?
#548
luozhy88
closed
2 years ago
5
Error in rule rename_genomes and dram_download
#547
bnm1317
closed
2 years ago
11
How to rerun after changing parameters
#546
mdehollander
closed
2 years ago
3
Error in rule error_correction
#545
ChristophKnapp
closed
2 years ago
3
Mamba installation Problem
#544
ChristophKnapp
closed
2 years ago
4
Incomplete documentation missing human genome link
#542
bnm1317
closed
2 years ago
2
Error in rule build_qc_report:
#541
omrctnr
closed
2 years ago
12
Error in rule classify
#540
skeffington
closed
2 years ago
3
Upgrading to CheckM2
#539
bcpd
closed
1 year ago
4
Error in rule identify
#538
skeffington
closed
2 years ago
5
Error with spades when installing remote packages
#537
DaniAlvy
closed
2 years ago
6
Make atlas handle large gene catalogs
#536
SilasK
closed
2 years ago
0
`atlas init-public`doesn't work.
#535
SilasK
closed
1 year ago
2
Speed up DRAM annotations
#534
jmtsuji
closed
2 years ago
0
Speed up DRAM annotations
#533
jmtsuji
closed
2 years ago
2
"Nothing provides requested Spades"
#532
DaniAlvy
closed
2 years ago
0
Error in rule run_megahit
#531
Nachida08
closed
1 year ago
2
Error in rule root_tree from gtdbtk
#530
yotsa
closed
2 years ago
4
Error in rule convert_sam_to_bam
#529
skeffington
closed
2 years ago
6
Advice on memory allocation
#528
skeffington
closed
2 years ago
2
Error in rule DRAM_annotate
#527
HamzaMbareche
closed
2 years ago
8
Error in rule run_checkm_lineage_wf. UPDATE
#526
HamzaMbareche
closed
2 years ago
1
Error in rule run_checkm_lineage_wf
#525
HamzaMbareche
closed
2 years ago
6
Enhance documentation
#524
jmtsuji
closed
2 years ago
0
how to activate SemiBin
#521
Mechah
closed
2 years ago
4
Fix Typos
#520
roshni-b
closed
2 years ago
1
Insufficient memory for the Java Runtime Environment to continue
#519
HamzaMbareche
closed
2 years ago
2
new gtdb database
#518
SilasK
closed
2 years ago
1
Question: restarting after pipeline interrupted
#517
skeffington
closed
2 years ago
2
Invalid maximum heap size: -Xmx0G
#516
HamzaMbareche
closed
2 years ago
1
Error in rule combine_gene_coverages: not enough memory for large datasets
#515
leasi
closed
2 years ago
2
Error in "binning.smk" and snakemake "returned non-zero exit status 1"
#513
akbyers
closed
1 year ago
4
Error in rule align
#511
animesh
closed
2 years ago
1
Error in rule concat_annotations: cannot open ‘genomes/annotations/dram/intermediate_files/MAG45/annotations.tsv’ for reading: No such file or directory
#510
animesh
closed
2 years ago
2
Error in gtdb download
#509
bryshalm
closed
2 years ago
4
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