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In deep review, the issues and pull requests were a critical part of the manuscript. I'd like to discuss strategies for archiving some of this metadata.
One initial thought would be to have the bu…
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#333 introduced the first version of a spellchecker, but there are several remaining areas for improvement.
**GitHub Actions:** ✔️
We should be able to run the spellcheck filter in GitHub Actions …
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I created a repository to use manubot in ([https://github.com/UCSC-Treehouse/TUBI-2023](https://github.com/UCSC-Treehouse/TUBI-2023)). I'd like CI to run on github. I ran
`bash
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these have accumulated over time with recent wild proliferation...
which ones am I missing? 😭
## actual core repos
- https://github.com/sourmash-bio/sra_search - actual `searcher` code in Ru…
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I noticed that images in the manuscript HTML view fail to render ([permalink](https://simonvh.github.io/gimmemotifs-manuscript/v/dff6a130defd8c910b6a60facacf5a27c29c9e5a/)).
I think it is because t…
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One great feature of bioRxiv is that it automatically adds a link to the published version of a manuscript after publication. Could we add something similar to Manubot manuscripts? We already have d…
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I highlight text with my mouse as I'm reading this. Apparently, there are lots of us who do this.
This is really annoying on Manubot HTML outputs because the highlight popup comes up every time. On…
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Just have a weird question. I find this super cool and very productive. But, what if some senior co-authors still like to use the old fashioned "track changes" in MS Word? Any idea or advice on how to…
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I'm poking around my new manubot paper, and a few things tripped me up. I've worked through them, but thought I might mention them here and (if I'm right about them :) I would be happy to add to the
…
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In light of recent discussion (See #810) it is apparent that we need to decide on a method to determine author ordering for future releases.
The current suggestion is to have contributors listed at…