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Dear MicrobiomeHD Team,
I hope this message finds you in good health and high spirits. Your meticulous work on the MicrobiomeHD, offering a seamless and comprehensive platform for reproducibility o…
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* pharokka version: 1.5.1
* Python version: 3.10.13
* Operating System: linux
### Description
Dear George,
Thank you for pharokka! We have it running overall well but we're getting some conti…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT**
# General Notes
This repository serves as a mostly automa…
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I created workflow/dataset directories and installed Qadabra as specified in the tutorial (using conda instead of mamba), but when I try to add the dataset I keep getting an error stating that the tab…
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(Part of review thread https://github.com/openjournals/joss-reviews/issues/6062)
Overall, the paper reads well, and I am convinced of your pipeline's value both in terms of
need for the community…
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I am interesting in post-DADA2 clustering of ASVs for more general animal biodiversity questions at the species or genus-level using, in this case, the CO1 marker. While the ASVs are very interesting …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MicrobialGenomics-IrsicaixaOrg/dar
Confirm the fo…
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Greetings to this devoted community! 👋
Firstly, congratulations on the profound work on the longitudinal analysis in children gut microbiome. It's indeed a commendable effort dedicated to understan…
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He
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For my pred_metagenome_unstrat file I have the EC:1.1.1.1 and not the Ko annotation and from the best of my knowledge, this file ought to be my abundance file. However, I had to take a long route to c…