issues
search
gbouras13
/
pharokka
fast phage annotation program
MIT License
137
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error with Phanotate (return code 1)
#350
Norina28
opened
6 days ago
0
Google Colab error
#349
CristianUNR
opened
1 week ago
1
Issues with pharokka_multiplotter.py: IndexError: index -1 is out of bounds for axis 0 with size 0
#348
aryehjc
opened
1 week ago
0
fixes #346 manual db link [skip ci]
#347
gbouras13
closed
4 weeks ago
0
Database issues
#346
ZoseJapata
closed
4 weeks ago
7
v1.7.2
#345
gbouras13
closed
1 month ago
0
v1.7.2
#344
gbouras13
closed
1 month ago
0
UnsatisfiableError when installing with conda
#343
fluhus
closed
1 month ago
4
Inquiry on Pharokka
#342
songmj86
closed
1 month ago
3
Libgsl error from mash - cant run
#341
raw937
closed
1 month ago
1
update readme and notebooks
#340
gbouras13
closed
2 months ago
0
issues parsing genbank files produced by Pharokka
#339
vmkhot
opened
2 months ago
3
Linear genome plot?
#338
raw937
opened
2 months ago
3
getting consistent error with pharokka_multiplotter
#337
JEMINA-JOHN
opened
2 months ago
1
v1.7.1
#336
gbouras13
closed
3 months ago
1
Error with some sequences
#335
Sudaraka88
closed
3 months ago
2
Number-like sequence ID would generate invalid genbank files.
#334
shenwei356
closed
3 months ago
1
v1.7.0
#333
gbouras13
closed
4 months ago
1
ValueError: invalid literal for int() with base 10: 'Traceback (most recent call last):\n File "/home/resistance/miniconda3/envs/pharokkaENV/bin/phanotate
#332
yzhong005
opened
4 months ago
6
Alphabet error while annotating phage
#331
Fabian-Bastiaanssen
opened
4 months ago
1
Replace `hmmscan` with `hmmsearch`
#330
valentynbez
opened
4 months ago
0
fix: wrong attribute for `hmmer.plan7.Hit`
#329
valentynbez
closed
4 months ago
0
Wrong attribute - PyHMMER module
#328
valentynbez
closed
4 months ago
2
KeyError: 'Name contig'
#327
SergeyBaikal
opened
5 months ago
4
question about pharokka_plotter.py and multi-contig .fasta
#326
nsvarona
closed
4 months ago
3
Pharokka stuck at running mmseqs search
#325
quocviet0908
opened
5 months ago
7
v1.6.1
#324
gbouras13
closed
5 months ago
1
tRNAs are not being included in tbl file.
#323
hmontenegro
closed
5 months ago
1
Update biopython <1.82 [skip ci]
#322
gbouras13
closed
5 months ago
0
v1.6.0
#321
gbouras13
closed
5 months ago
1
pharokka failure due to missing BioPython function
#320
leahfa
closed
5 months ago
6
wrong Aragorn version
#319
ZaeemBIo
closed
5 months ago
0
ERROR | __main__:main:115 - The database directory was unsuccessfully checked. Please run install_databases.py.
#318
ZaeemBIo
closed
5 months ago
0
Prodigal-gv and Prodigal issue
#317
raw937
closed
5 months ago
1
dropped contigs
#316
k6logc
closed
5 months ago
5
Mash issue in upgrade
#315
raw937
closed
6 months ago
3
Prodigal not working Pharokka v1.4.1
#314
raw-lab
closed
5 months ago
2
Missing lot of databases
#313
ala98412
opened
6 months ago
8
Fixes #311 db path [skip ci]
#312
gbouras13
closed
6 months ago
0
database links incorrect
#311
marade
closed
6 months ago
2
Bioconda version is out of date
#310
marade
closed
6 months ago
2
database error
#309
mengyuan09876
closed
6 months ago
2
Pharokka fails on large dataset
#308
nelsonruth11
closed
5 months ago
4
phannote issues?
#307
raw937
closed
5 months ago
2
what gene should we use to put at +1 in a Stx-phage assembly
#306
splaisan
closed
7 months ago
4
FR: add a pharokka_plotter.py argument to select the contig to be plotted in case more than one contig in the assembly
#305
splaisan
closed
7 months ago
2
Cannot get pharokka databases installed
#304
Jlee795
closed
5 months ago
8
PHAROKKA introducing dataframe and its dtype into NCBI Feature Table (.tbl) in each Loop.
#303
deinotoxazumab
closed
5 months ago
5
add plotting labels clarification
#302
gbouras13
closed
8 months ago
0
Pharokka fails when contig input file ends in .fa, runs when file ends in .fasta
#301
nelsonruth11
closed
8 months ago
1
Next