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From what I can tell, mzR (and MSnBase, etc) all expect fully qualified file names.
It would be great to have methods that support `connections` from files, gzfiles, zip files, url's, etc.
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Currently, Bullseye assumes that the MS1 spectra are in a separate file from the MS2 data. We should allow it to read both types of spectra from a single file.
Five sample input files can be found i…
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Dear developers!
We have some randomly occurring errors in the `MSnbase` package (see issue https://github.com/lgatto/MSnbase/issues/151) that I believe are somehow related with the `Rcpp` package. F…
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The following error occurs when trying to load files using RStudio. The same files work fine with the regular R gui:
```
> ms
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@lgatto are you also getting failing unit tests e.g. in _test_equalMSnExp.R_? What really puzzles me is that I don't get any errors when I run this file selectively with `test_file("test_equalMSnExps.…
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This is an improvement suggestion...
It seems that you are using some binary format to store the parameters of search GUI.
I can't see a reason for this type of format when the file is just 10K.
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A simple fixed Carbamidomethyl (C) mod leads to a crash.
16:52:58 NOTICE: MSGFPlusAdapter of node # 13 started. Processing ...
MS-GF+ Beta (v9979) (3/26/2014)
D:\data\Lars\temp\2015-02-10_165258_ukmz…
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From a discussion on the developers mailing list.
@hendrikweisser wrote:
I wanted to use PeakPickerHiRes on some mzML files and got this error:
"Not all spectra are sorted according to peak m/z posi…
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_Issue by **[schymane](https://github.com/schymane)** from Tuesday Oct 22, 2013 at 09:02 GMT_
_Originally opened as https://github.com/sneumann/RMassBank/issues/22_
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Currently require compound ID…