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Extract data from the example OMOP data to fill the [inpatient_microbiology](https://ramses-antibiotics.web.app/reference/inpatient_microbiology.html) table from the validate article. This is a split …
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While trying to use the locally hosted nlm-ingestor API, I am receiving this error
```urllib3.exceptions.LocationValueError: No host specified.```
In 3 command prompts, I have ```java -jar tika-se…
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I ran MVP2 what genes may be downregulated by Benazepril
Prod: https://ui.transltr.io/main/results?l=Benazepril&i=PUBCHEM.COMPOUND:5362124&t=4&r=0&q=75b35688-894b-4b8c-91c2-ab2ec256c394
Test: …
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Website: https://www.ncbi.nlm.nih.gov/research/pubtator3/
FTP: https://www.ncbi.nlm.nih.gov/research/pubtator3/ (We are most interested in [relation2pubtator3.gz](https://ftp.ncbi.nlm.nih.gov/pub/lu/…
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IT would be interesting to auto-generate a plot for the readme that summarizes the source ontologies that we are building on.
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I'm getting the following error when parsing some PDFs, but not with others. Unfortunately I cannot share the files, but I can share some metadata upon request.
```
nlm-ingestor | /usr/local/lib/…
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When we import new versions of the UMLS Metathesaurus, we set the version numbers for the new submissions to match the Metathesaurus insertion version, e.g. 2023AB, 2024AA, etc. See the MedDRA summary…
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Add A-score as another score in the search output.
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4mmc + Caffeine
Caution
This combination of stimulants is not generally necessary and may increase strain on the heart, as well as potentially causing anxiety and great physical discomfort. Howeve…
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Attempting to webscrape youtube channels for scientific literature --
```
urls = re.findall(r"(https?://(?:doi\.org|arxiv\.org|ncbi\.nlm\.nih\.gov|researchgate\.net|scholar\.google\.com)/\S+)", d…