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Hi,
I am using Python 3.6.15 in Ubuntu 20.04 (Running inside a Docker container). The packages that I use are listed in the **attached text file**
[packages_python.txt](https://github.com/cox-lab…
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above all file converter and metabolitespectralmatcher.
Since we have a reader class already, this should be two lines.
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Dear Glyco-Decipher team,
unfortunately, a run fails with the following error messages even when using the Demo data:
```
2024-03-22 14:14:01 [Peptide Identification] Running MS-GF+ to Get P…
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Hi,
I searched through the issues and didn't find anyone else requesting information on this issue, I apologize if I missed one.
I'm using OpenMS (via pyOpenMS) to deisotope .mzXML files. We not…
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Hi, in the Readme page, you mentioned the GUI file OpenSeachKDE.jar. However, I didn't find it in the releases page. Where can I find it? Thank you so much.
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Hi,
I was trying to run the standalone version of PepQuery with following command to identify novel peptides -
`java -Xmx30G -jar pepquery-2.0.2/pepquery-2.0.2.jar -b CPTAC_Prospective_Ovarian_JH…
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```
Hi all, thank you for this great lib. I have located (and coded a solution for)
the following bugs in Tandem2mzid (v1.6.10) when reporting in the output mzid
the fragment ions from a X!Tandem in…
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Hello,
I’m currently working with SearchGui and PeptideShaker on a CPTAC dataset and am encountering some issues. I successfully ran the PeptideShakerCLI, which produced a .psdb file of 66,072 byte…
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This is a request from a Crux user. If a spectrum has no charge state specified or has a charge state of 0, then tide-search should search the spectrum in all possible charge states, ranging from min-…
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### Description of the bug
Im processing a dataset using proteomicsLFQ and it fails when it found empty list of peptides in one of the idXMLs.
```
TOPPBase.cpp(1605): Value of string option 'kee…