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The evidence step resolves the IDs provided by the evidence field `targetFromSourceId` to an approved `targetId` in the ETL. Unresolved cases are sent to `invalid` if the mapping is not possible.
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```GraphQL
"Thsi element represents the tag variant with its associated statistics"
type CredSetTagElement {
"Tag Variant in the credibleset table"
tagVariant: Variant!
"p-val"
pval: F…
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The phenomeScan.R test dataset works fine for me, but when trying on my own dataset it runs without errors but only gets to "LOADING DONE" and then ends, outputting empty results files without ever lo…
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When visiting target association pages (not disease), the datatypes are disabled and they always report counts of 0.
The problem looks widespread across all targets: [ACHE](https://main--platform-app…
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Hello,
I have been trying to run a PheWAS for one of my projects, and I have been getting a few errors that I don't understand (I am a biologist by training, and also a new scientist).
First, in…
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Investigating the output of the latest 21.04 pipeline run, @d0choa has identified that there are 90 invalid evidence strings for PheWAS where `targetId == ""`.
This is because the PheWAS parser execu…
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May I kindly ask your assistance, I've try to installing PheWAS in R but i have no luck
I keep getting this error. please see below
Installing package into ‘C:/Program Files/R/R-4.0.3/library’
(a…
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Are there any plans to integrate the UKB RVAS/GWAS results from the [genebass](https://genebass.org/) and [AstraZeneca 300k](https://azphewas.com/) exome association studies?
Along those lines, I w…
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## Background
We want to explore extracting gene/disease associations from the exome sequencing analyses carried out by Regeneron Genetics Center.
Their work is collected in their recent [publicat…
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See:
https://github.com/lifebit-ai/phewas/blob/3d1ce8e1941516cf9291f4fc0b14baf8c43938b1/main.nf#L246
Aim:
- Ensure `plink` is in pipeline Dockerfile and use it
- Remove usage of lines such as : …