MRCIEU PHESANT issues - Githubissues

MRCIEU / PHESANT

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

MIT License

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issues

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The url in the 'update-outcome-info' expired

#46 Y-Isaac opened 2 months ago
0
Result processing output: DC file does not exist

#45 Phazha closed 5 months ago
1
Different Number of Variable Exposures When Running in Sub Group

#44 Phazha closed 6 months ago
0
NO related required variable

#43 aikedan closed 6 months ago
2
update the data-coding-ordinal-info.txt file

#42 senmingjiu closed 6 months ago
3
running mainCombineResults.r got a blank forest plot

#41 Dragonfly1108 closed 9 months ago
1
Issue with resDir Argument in phenomeScan.r Script

#40 senmingjiu closed 9 months ago
1
Can the data type of the trait be specified somehow?

#39 franrodalg closed 9 months ago
2
Error "ERROR 1990 CAT-SIN 100349" and Error in polr(phenoFactor ~ ., data = confounders, Hess = TRUE): attempt to find suitable starting values failed

#38 FleetingA closed 1 year ago
1
Update addNewFields.sh

#37 FleetingA opened 1 year ago
0
File content and structure for main analysis

#36 FleetingA closed 1 year ago
1
Error: computing correlation between genotype and other phenotypes from UKB

#35 zqsha closed 1 year ago
1
Error in read.table(opt$phenofile, header = 1, nrows = 1, sep = sepx) : cannot allocate buffer in 'readTableHead'

#34 zqsha closed 1 year ago
1
Failed to export recoded phenofiles without any analysis

#33 huangyuanf closed 2 years ago
1
How to export recoded phenofiles without any analysis

#32 syuxuan closed 2 years ago
1
Test File for Genetic Data to be given as input file

#31 sawantaniket461 closed 2 years ago
1
Variable could not be found in pheno info file

#30 sophiesmart closed 2 years ago
1
Guidance on how to analyze a large UKB dataset

#29 vforget closed 2 years ago
1
Ordered Logistic Regression p-values appear to depend on scaling (standardisation) of the exposure

#28 pjawinski closed 2 years ago
1
Removing NAs from confounder data BEFORE turning assessment center into indicator variable & merging

#27 IttaiEres closed 2 years ago
1
Any plans to support newer versions of R?

#26 parkcc closed 2 years ago
1
Phecode IDs are not included by PHESANT

#25 Shicheng-Guo closed 2 years ago
1
I cannot install the package

#24 ABOTGAO closed 3 years ago
0
error when running the example

#23 symnina closed 2 years ago
1
"LOADING DONE" with no results

#22 alex-berry closed 2 years ago
3
Error in 1:nrow(dataPheno) : argument of length 0 Calls: loadData -> fixOddFieldsToCatMul

#21 alex-berry closed 3 years ago
3
Installation issues

#20 kvedes closed 3 years ago
1
GLM not always converging

#19 mkirchler closed 2 years ago
1
Error in `$<-.data.frame`(`*tmp*`, "Cat1_Title", value = "")

#18 C-Gouveia closed 4 years ago
1
I'm getting no pvals or upper and lower vals when merging - any idea why?

#17 C-Gouveia closed 4 years ago
1
Standard deviation change - negative values

#16 C-Gouveia closed 4 years ago
1
Error when running mainCombineResults.r

#15 C-Gouveia closed 4 years ago
3
Exclusion codes

#14 hjulkunen closed 4 years ago
1
Issue due to commas in comments when running mainCombineResults.r

#13 ScottZimmerman closed 4 years ago
1
There is probably not enough contiguous virtual memory available

#12 jielab closed 4 years ago
1
!!! PHESANT has stopped - add required variables to phenotype file or remove relevant phenotypes

#11 JuRaGa closed 5 years ago
1
results processing error

#10 ad2n15 closed 4 years ago
3
Getting error running the example

#9 yang654 closed 4 years ago
4
Develop

#8 QuanliWang opened 5 years ago
0
Correct ordinal info for 100643

#7 Conxz closed 4 years ago
0
How to run a phenome scan with my own data?

#6 PhilPalmer closed 5 years ago
4
the full version of outcome-info.tsv and data-coding-ordinal-info.txt

#5 jielab closed 5 years ago
6
phenofile preparation

#4 Conxz closed 5 years ago
2
Run phenomeScan.r from any directory

#3 rvernica closed 2 years ago
0
Warning message, apparently from testCatSingle.r

#2 AldoCP closed 5 years ago
1
Export only coded variables without performing association

#1 andgan closed 7 years ago
2