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[Quartz crystal microbalance with dissipation](https://en.wikipedia.org/wiki/Quartz_crystal_microbalance_with_dissipation_monitoring) (QCM-D) is an advanced technique that enables real-time screening …
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I viewed the whole code and found that the code only use toy dummy data to train model. So I don't really understand how you use those data to train GCN model. Can you supply the code or instructions…
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For some applications, it might be nice to avoid any scores transferred from other species. Will look into creating a human-evidence-only combined score.
See [this notebook](https://nbviewer.jupyte…
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## 🐛 Bug
## Minor Issues with rendering of Tutorials
1. https://deepchem.io/tutorials/physics-informed-neural-networks/ - Formula Not Rendering properly
2. https://deepchem.io/tutorials/int…
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IFNL3 has two different interactions. The complexes IL28_receptor and Type_III_IFNR.
Both complexes consist of the same two proteins, IFNLR1 and IL10RB therefore this results
in a duplicated intera…
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It is my experience that when the simulation system has several proteins and some structural ions for some proteins, the proper wrapping of trajectory is becoming a true challenge that most software (…
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Hello - just cannot get arpeggio to work, and would much appreciate some help! Thanks Shoumo
Installation as follows:
conda create -n arpeggio-env python=3.7 anaconda
conda activate arpeggio-env
…
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SPICE 2 is close to finished, which means this is a good time to discuss possible additions for version 3. Here are some ideas to get things started.
- **Nonbonded interactions between amino acids…
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Hi there
As you mentioned in the tutorial, the interactions are not symmetric. So, I am wondering how we can infer the directionality of the interactions.
Best
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Here's the first round of molecules that @cstein and I found with genetic algorithms. They are roughly on order of preference based on the number of protein-ligand interactions in common with the fra…