ventolab CellphoneDB issues

ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

https://www.cellphonedb.org/

MIT License

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issues

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Enhanced CellPhoneDB Visualization in Python

#198 Starlitnightly opened 3 days ago
0
Metafile_error if unique cells = unique cell_types

#197 Leonhard2000 opened 4 days ago
0
Gene name duplications

#196 Leonhard2000 opened 1 week ago
0
No CellphoneDB interactions found in this input

#195 fafa92 opened 2 weeks ago
2
Means for reciprocal cell type comparisons are different

#194 manf1984 opened 2 weeks ago
2
Cellphonedb for proteomics analysis

#193 harshagr21 opened 3 weeks ago
1
negative values of lr-means column

#192 ngvananh2508 opened 4 weeks ago
2
Should all genes be inputted, or only just the genes related to interactions?

#191 bitcometz opened 1 month ago
1
KeyError when scoring interactions in CellPhoneDB

#190 GUOYF0412 opened 1 month ago
5
Can CellphoneDB work without complex_input.csv?

#189 bitcometz closed 1 month ago
2
About integrin genes from the output

#188 Pedramto89 opened 1 month ago
8
Directionality of interactions

#187 Pedramto89 opened 1 month ago
2
KeyError: 'significant_means'

#186 shenhanjing closed 1 month ago
5
KeyError: 'LAMA3_integrin_a3b1_complex' when running cpdb_statistical_analysis_method.call

#185 VittoriaDBocchi closed 1 month ago
4
Exception: Some clusters/cell_types in microenvironments file are not present in metadata

#184 Jessica1525809 opened 2 months ago
3
Equality comparisons are not supported for AnnData objects, instead compare the desired attributes.

#183 zhongzheng1999 closed 1 month ago
4
[ERROR] Invalid Counts data: Counts values are not decimal values. Incorrect file format

#182 guqing94 opened 2 months ago
1
interacting_pair is ligand_receptor or receptor_ligand?

#181 yanwuanxin opened 2 months ago
5
Unexpected error in cellphonedb: AttributeError: Can only use .str accessor with string values!

#180 starfallin closed 2 months ago
1
Can Minimum p-value less than 1e-3

#179 yxwucq closed 3 months ago
1
How to handle the different cells of interest analysis

#178 Pedramto89 opened 3 months ago
1
KeyError: 'significant_means'

#177 dhairya02 opened 3 months ago
2
KeyError: 'FN1_integrin_a5b1_complex'

#176 Pedramto89 closed 1 month ago
6
Surface proteins

#175 Pedramto89 opened 4 months ago
1
remove the last chunk from T1_Method2.ipynb and T1_Method3.ipynb

#174 fentouxungui closed 4 months ago
1
EmptyDataError on Test Data

#173 cap76 closed 4 months ago
3
How to download database?

#172 ryao-mdanderson opened 4 months ago
6
All counts filtered

#171 sierranishizaki opened 4 months ago
3
KeyError

#170 Inbarpl opened 4 months ago
1
CellSign results have lost interaction orientation

#169 rchapple2 opened 5 months ago
1
ValueError: a.shape[axis] doesn't match length of group_idx.

#168 deevdevil88 closed 5 months ago
1
raise RuntimeError in spawn.py

#167 mmuuyyii opened 5 months ago
1
AllCountsFilteredException: All counts filtered for db v5 and https://github.com/ventolab/CellphoneDB/tree/master/example_data

#166 Inbarpl closed 5 months ago
2
Invalid Counts data

#165 ncedi12 closed 5 months ago
2
Update RESULTS-DOCUMENTATION.md

#164 partrita closed 5 months ago
0
ValueError: too many values to unpack (expected 4)

#163 Gitman0810 opened 6 months ago
2
Warning: ‘>’ not meaningful for factorsError in if (any(lr_interactions[, 3] > 0)) { : missing value where TRUE/FALSE needed

#162 zehualilab opened 6 months ago
1
compare the results of DEG analysis with results of v4.0.0

#161 MugenQin opened 6 months ago
3
ParseCountsException: Invalid Counts data

#160 scuhkf opened 6 months ago
7
ParseCountsException: Invalid Counts data

#159 scuhkf closed 6 months ago
0
Update version in __init__

#158 akurlovs opened 7 months ago
1
"Some cells in meta did not exist in counts" error

#157 ndrubins closed 7 months ago
2
Missing CellSign_active_interactions and CellSign_active_interactions_deconvoluted files when running Method2

#156 wfaalajr closed 7 months ago
2
Exact p-value output file?

#155 ccl6 opened 7 months ago
1
Where is the iterations number file ?

#154 Portulaca666 opened 7 months ago
2
KeyError: 'VEGFA_FLT1_complex'

#153 PattF closed 5 months ago
9
Unable to run cellphonedb due to database

#152 molybdenumt closed 7 months ago
7
Relevance score in CPDB

#151 Pedramto89 closed 7 months ago
2
Cell expression thresholds

#150 jamesl-g opened 8 months ago
1
T1_Method2 tutorial doesn't seem to match the actual file

#149 dd315 closed 7 months ago
3