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ventolab
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CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
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T1_Method2 tutorial doesn't seem to match the actual file
#149
dd315
closed
7 months ago
3
UFuncTypeError: when running cpdb analysis
#148
kpeeles01
opened
8 months ago
3
cellphonedb install problem
#147
wrfokokokwrf
closed
7 months ago
1
Converting Seurat object into counts input file
#146
nea-k
opened
8 months ago
2
Clarification Needed on --threshold Argument
#145
macelik
closed
8 months ago
2
Using h5ad file and error "Some cells in meta did not exist in counts,Maybe incorrect file format": Invalid Counts data
#144
saum-kmr
closed
8 months ago
8
ValueError: negative indices not supported
#143
GGboy-Zzz
closed
8 months ago
3
Issue with installation
#142
hemantgujar
closed
9 months ago
2
Typo in readme.md
#141
pvalle6
closed
7 months ago
1
Running statistical_analysis_method gets stuck at Running Real Analysis
#140
anemartinezlarrinaga2898
closed
9 months ago
23
Download error
#139
Ithinky
closed
10 months ago
2
numpy.core._exceptions._UFuncNoLoopError: ufunc 'add' did not contain a loop with signature matching types (dtype('int64'), dtype('<U1')) -> None
#138
cirsina
closed
10 months ago
5
Error in generating costomize interaction database
#137
hfl112
closed
11 months ago
3
db_utils.download_database produces incompatible files for v3.0.0 and v4.0.0
#136
sisterdot
closed
7 months ago
1
Missing interactions post-method2 analysis
#135
jl1693
closed
7 months ago
1
Example running the DEG-based method with microenviroments file
#134
cancerGen
closed
7 months ago
1
Error in building DB for v3.0.0
#133
avsarg
closed
7 months ago
4
error in result saving
#132
harshagr21
closed
7 months ago
1
error in analysis
#131
harshagr21
closed
11 months ago
2
cellphonedb does not work
#130
Teich2233
closed
7 months ago
4
error trying to download database
#129
kbrulois
closed
7 months ago
1
Minor typo fixes (lines 8, 65, 70 et alia)
#128
kant
closed
8 months ago
0
OSError on windows
#127
rocketeer1998
closed
11 months ago
4
Invalid Counts data
#126
zhuyewen
closed
7 months ago
2
The rabbitmq callback invoke cellphonedb error for the thread
#125
honghh2018
closed
7 months ago
1
About the pvalue.txt result
#124
SZ-qing
closed
1 year ago
2
Question about method 2 mean calculation for interactions containing complex partner
#123
stanaka6
closed
7 months ago
1
multiple samples interaction comparision
#122
hua1991
opened
1 year ago
6
Pvalue adjusting
#121
maximelepetit
closed
7 months ago
7
questions about cellphonedb database protien_input file
#120
YinCY123
closed
7 months ago
2
relevant_interactions_result don't have all celltype combinations.
#119
wangjiawen2013
closed
7 months ago
1
EmptyDataError: No columns to parse from file
#118
yanqiqian
closed
7 months ago
1
Application condition
#117
LuShuYangMing
closed
7 months ago
1
.mtx file as input?
#116
stefanerb89
closed
7 months ago
2
Normalization method with Seurat Object.
#115
ChoiJi-Hye
closed
1 year ago
1
Adding my own ligand-receptor pair to CellphoneDB
#114
biotech25
closed
7 months ago
4
KeyError: 'gene_synonym_to_gene_name'
#113
YinCY123
closed
1 year ago
4
Attempted to generate a database using Arabidopsis data, but failed. Please help & thanks
#112
bitcometz
closed
7 months ago
2
hierarchical comparsions
#111
wangjiawen2013
closed
7 months ago
1
[APP][Unexpected ERROR]:Heatmap_plot error
#110
SillaLIN
opened
1 year ago
3
Error when no interactions are found using cpdb_statistical_analysis_method
#109
ldiao
closed
7 months ago
1
latest scikit-learn
#108
wangjiawen2013
closed
1 year ago
5
Number of interactions between 2 different cell types
#107
zara03
closed
1 year ago
2
Is there any way to run CellphoneDB using a specific cluster pair(s)?
#106
stanaka6
closed
7 months ago
3
cannot import cpdb_degs_analysis_method
#105
ldiao
closed
1 year ago
6
One sided analysis for set of genes (DEGs)
#104
Xparx
opened
1 year ago
4
cannot install/use cellphonedb
#103
fabioark
closed
1 year ago
1
Running statistical_analysis_method gets stuck at 0%
#102
AClab-sgarcia
closed
1 year ago
18
Comparable across batches
#101
baigal628
closed
7 months ago
3
Cellphone DB
#100
zara03
closed
1 year ago
1
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