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ventolab
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CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
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Some Gene Names Are Missing From Results
#99
connerlambden
closed
7 months ago
1
InvalidIndexError: Reindexing only valid with uniquely valued Index objects
#97
jinlanzhan
closed
7 months ago
8
subsampling
#96
jinlanzhan
closed
1 year ago
9
call() got an unexpected keyword argument 'cpdb_file_path'
#95
renyuan1988
closed
7 months ago
11
degs_analysis Errors
#94
connerlambden
closed
1 year ago
4
cellphonedb plot heatmap_plot ;dlopen: cannot load any more object with static TLS
#93
Bessyyi
closed
1 year ago
0
[WARNING] Database '{value}' is not available. Trying to download it
#92
SerendipityCreate
closed
1 year ago
5
Which is the ligand and which is the receptor
#91
yanwuanxin
closed
1 year ago
1
Logger parameters lost in this line
#90
Ericsii
closed
1 year ago
1
R error dot_plot heatmap
#89
flyingmonster1
closed
7 months ago
2
Install CellphoneDB fails
#88
chrsyl
closed
1 year ago
1
How to do differential analysis for cellphonedb result
#87
xiasijian
closed
1 year ago
4
please update anndata to 0.8
#86
Bio-Quest
closed
1 year ago
0
Error: Got unexpected extra argument (hgnc_symbol)
#85
Pedramto89
closed
1 year ago
5
Type of normalisation
#84
joan-yanqiong
closed
1 year ago
1
Issue while plotting dotplot
#83
stalware
closed
1 year ago
2
Generating user-specific database produces psedo-interactions that are not passed in.
#82
macelik
closed
1 year ago
2
is LR results depends on number of cells in each cluster and number of cells per each group
#81
FADHLyemen
closed
7 months ago
1
drawing dot plot with the results of DEG analysis
#80
hypaik
closed
7 months ago
1
Setup packaging for bare essential
#79
prete
closed
1 year ago
0
numpy.core._exceptions._UFuncNoLoopError: ufunc 'add' did not contain a loop with signature matching types (dtype('<U21'), dtype('<U21')) -> dtype('<U21')
#78
Inbarpl
closed
1 year ago
2
error related DEG analysis
#77
hypaik
closed
1 year ago
3
error related to numpy version
#76
AiweiWu
closed
1 year ago
19
Output of the DEG method
#75
sevlandais
closed
1 year ago
1
numpy.core._exceptions._UFuncNoLoopError
#74
yjjeong86
closed
1 year ago
4
Error in cellphonedb database download
#73
XMUwsa
closed
1 year ago
0
Getting results only for specific cell type/cluster
#72
AvitalPo
closed
7 months ago
1
cellphonedb database generate fails with --user-interactions-only
#71
ZheFrench
closed
1 year ago
1
add links to ktplots in readme for plotting customisations
#70
zktuong
closed
1 year ago
1
Error when attempting to use a path which contains mtx/barcode/features files as an input
#69
SuiyueWestlake
opened
1 year ago
8
OSError when attempting to plot
#68
kfijan
closed
1 year ago
0
CPDB database_v4 errors
#67
Leonhard2000
closed
7 months ago
2
Mean calculation
#66
Leonhard2000
opened
1 year ago
2
How many LR interactions annotated in CellphoneDB v4 ?
#65
ZheFrench
closed
1 year ago
1
the calculation error of mean value of all the interacting partners in means.txt
#64
Bouncysig18
closed
1 year ago
1
AttributeError: Can only use .str accessor with string values!
#63
rachel662
closed
1 year ago
2
unexpected error
#62
rachel662
closed
7 months ago
13
Can't build Docker Image from Dockerfile
#61
johnjeang
closed
1 year ago
2
Precision of pvalues
#60
ddiez
closed
7 months ago
3
Missing dataset
#59
nasjr08
opened
1 year ago
1
New interactions
#58
mathewchamberlain
closed
7 months ago
2
Unable to download CellPhoneDB
#57
clb94
closed
7 months ago
5
error in statistical_analysis pipeline
#56
vicscott
closed
1 year ago
0
[ERROR] Invalid Counts data
#55
nadiacneto
closed
1 year ago
7
AssertionError on DEG pipeline
#54
cap76
opened
1 year ago
2
Exception: Some clusters/cell_types in DEGs are not present in meta, for no obvious reason
#53
polinaderev
closed
1 year ago
2
CellPhoneDB v4 absent in the repository
#52
polinaderev
closed
1 year ago
3
Error when subsetting with selected rows and cols
#51
garfieldyc
closed
1 year ago
2
Issue installing cellphoneDB on macOS
#50
nadiacneto
closed
1 year ago
4
R plot error dot_plot
#49
honghh2018
closed
7 months ago
9
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