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ventolab
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CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
322
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Issue installing cellphoneDB on macOS
#50
nadiacneto
closed
1 year ago
4
R plot error dot_plot
#49
honghh2018
closed
10 months ago
9
R error when plotting
#48
RuoyangShao
closed
2 years ago
2
Patch initial db download
#47
prete
closed
2 years ago
0
Cannot find interaction in annotated db
#46
parkjooyoung99
closed
10 months ago
3
Unexpected Error
#45
Guy2Horev
closed
2 years ago
4
Difference between `gene_name` and `hgnc_symbol`?
#44
apredeus
closed
2 years ago
2
same-cell-type "specific" interactions?
#43
ogandril
closed
2 years ago
2
Add --release option to generate database to exclude previously curated
#42
prete
closed
2 years ago
0
Error reading files from WriteMM: no features.tsv
#41
forecast1216
closed
2 years ago
3
from R Seurat: log-normalized values @data, rather than @counts?
#40
forecast1216
closed
2 years ago
3
numpy.core._exceptions error ufunc 'add'
#39
iichelhadi
closed
2 years ago
0
the total number of significant interactions and mean values when comparing the results from more than one sample
#38
cjhong
closed
10 months ago
1
Negative indices error when using h5ad generated from dgCMatrix
#37
jachou1
closed
10 months ago
2
Error w/ h5ad input (example and my data)
#36
jachou1
closed
2 years ago
0
Issues with cellphonedb plot after fresh installation
#35
fbnrst
closed
2 years ago
2
414 Request-URI Too Large
#34
brianpenghe
closed
1 year ago
1
How was CellPhoneDB coined?
#33
biotech25
closed
2 years ago
2
invalid entry in coordinates array
#32
anidj
closed
2 years ago
1
Using raw or Normalized counts ?
#31
anidj
closed
2 years ago
2
Selected col and rows not working - RStudio
#30
Romaindonne
opened
2 years ago
2
error when input with h5ad
#29
notimenocall
closed
1 year ago
7
Downloading Database
#28
sylvia-science
closed
2 years ago
2
Question about receptor annotation
#27
JanLeipzig
closed
2 years ago
1
[ERROR] Unexpected error
#26
kayihui
closed
2 years ago
0
ModuleNotFoundError: No module named 'sklearn.cluster.k_means_'
#25
TsviyaOlender
closed
1 year ago
5
Can not set --result-precision was other number
#24
Zejian-Wang
closed
10 months ago
1
cellphonedb heatmap with microenvironments
#23
Nasrine26
closed
2 years ago
2
CellphoneDB version
#22
DanieleMuraro
closed
2 years ago
2
pvalues.txt outputting binary results
#21
rs-hunter
closed
2 years ago
7
Are all cellphonedb database v2.0.0 identical
#20
JanLeipzig
closed
2 years ago
2
Error while using plotting functions
#19
aditisk
closed
2 years ago
1
a.shape[axis] doesn't match length of group_idx
#18
carloelle
closed
1 year ago
3
bug report with newest numpy and pandas.
#17
QqQss
closed
2 years ago
1
ValueError: a must be scalar or 1 dimensional, use .ravel to flatten
#16
FanZhang9
closed
2 years ago
5
deconvoluted?
#15
NMalhi92
closed
2 years ago
2
No CellPhoneDB interacions found in this input
#14
danli349
closed
2 years ago
3
Subsetting dotplot
#13
monikaramos
closed
2 years ago
3
error report during running CellphoneDB
#12
sadiexiaoyu
closed
2 years ago
4
Index dictionary for resultant interactions and signaling
#11
monikaramos
closed
2 years ago
1
output pvalue instead of binarized pvalues
#10
nathanin
closed
2 years ago
1
Does it make sense to use CellPhoneDB on mouse data?
#9
hyjforesight
closed
2 years ago
2
How to set up R environment for cellphonedb?
#8
mxiang1
closed
1 year ago
5
Why the p values and mean values of clusterA-clusterB are different with the clusterB-clusterA?
#7
zyan0626
closed
2 years ago
1
counldn't find database version 3
#6
realzehuali
closed
2 years ago
1
no such option: --microenvs
#5
DanieleMuraro
closed
2 years ago
2
struct.error: 'i' format requires -2147483648 <= number <= 2147483647
#4
Zifeng-L
closed
2 years ago
1
Differentially Expressed Genes (DEGs) analysis
#3
prete
closed
3 years ago
0
Microenvironments
#2
prete
closed
3 years ago
0
Core method refactor
#1
prete
closed
3 years ago
0
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