issues
search
ventolab
/
CellphoneDB
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
305
stars
52
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Whether single cell data of different cell components are suitable for analysis after integration
#199
Dolphin-dfy
opened
4 days ago
1
Enhanced CellPhoneDB Visualization in Python
#198
Starlitnightly
opened
1 week ago
0
Metafile_error if unique cells = unique cell_types
#197
Leonhard2000
opened
1 week ago
0
Gene name duplications
#196
Leonhard2000
opened
1 week ago
0
No CellphoneDB interactions found in this input
#195
fafa92
opened
3 weeks ago
3
Means for reciprocal cell type comparisons are different
#194
manf1984
opened
3 weeks ago
2
Cellphonedb for proteomics analysis
#193
harshagr21
opened
3 weeks ago
1
negative values of lr-means column
#192
ngvananh2508
opened
1 month ago
2
Should all genes be inputted, or only just the genes related to interactions?
#191
bitcometz
opened
1 month ago
1
KeyError when scoring interactions in CellPhoneDB
#190
GUOYF0412
opened
1 month ago
5
Can CellphoneDB work without complex_input.csv?
#189
bitcometz
closed
1 month ago
2
About integrin genes from the output
#188
Pedramto89
opened
1 month ago
10
Directionality of interactions
#187
Pedramto89
opened
1 month ago
2
KeyError: 'significant_means'
#186
shenhanjing
closed
1 month ago
5
KeyError: 'LAMA3_integrin_a3b1_complex' when running cpdb_statistical_analysis_method.call
#185
VittoriaDBocchi
closed
1 month ago
4
Exception: Some clusters/cell_types in microenvironments file are not present in metadata
#184
Jessica1525809
opened
2 months ago
3
Equality comparisons are not supported for AnnData objects, instead compare the desired attributes.
#183
zhongzheng1999
closed
1 month ago
4
[ERROR] Invalid Counts data: Counts values are not decimal values. Incorrect file format
#182
guqing94
opened
2 months ago
1
interacting_pair is ligand_receptor or receptor_ligand?
#181
yanwuanxin
opened
2 months ago
5
Unexpected error in cellphonedb: AttributeError: Can only use .str accessor with string values!
#180
starfallin
closed
2 months ago
1
Can Minimum p-value less than 1e-3
#179
yxwucq
closed
3 months ago
1
How to handle the different cells of interest analysis
#178
Pedramto89
opened
3 months ago
1
KeyError: 'significant_means'
#177
dhairya02
opened
3 months ago
2
KeyError: 'FN1_integrin_a5b1_complex'
#176
Pedramto89
closed
1 month ago
6
Surface proteins
#175
Pedramto89
opened
4 months ago
1
remove the last chunk from T1_Method2.ipynb and T1_Method3.ipynb
#174
fentouxungui
closed
4 months ago
1
EmptyDataError on Test Data
#173
cap76
closed
4 months ago
3
How to download database?
#172
ryao-mdanderson
opened
4 months ago
6
All counts filtered
#171
sierranishizaki
opened
4 months ago
3
KeyError
#170
Inbarpl
opened
5 months ago
1
CellSign results have lost interaction orientation
#169
rchapple2
opened
5 months ago
1
ValueError: a.shape[axis] doesn't match length of group_idx.
#168
deevdevil88
closed
5 months ago
1
raise RuntimeError in spawn.py
#167
mmuuyyii
opened
5 months ago
1
AllCountsFilteredException: All counts filtered for db v5 and https://github.com/ventolab/CellphoneDB/tree/master/example_data
#166
Inbarpl
closed
5 months ago
2
Invalid Counts data
#165
ncedi12
closed
5 months ago
2
Update RESULTS-DOCUMENTATION.md
#164
partrita
closed
5 months ago
0
ValueError: too many values to unpack (expected 4)
#163
Gitman0810
opened
6 months ago
2
Warning: ‘>’ not meaningful for factorsError in if (any(lr_interactions[, 3] > 0)) { : missing value where TRUE/FALSE needed
#162
zehualilab
opened
6 months ago
1
compare the results of DEG analysis with results of v4.0.0
#161
MugenQin
opened
6 months ago
3
ParseCountsException: Invalid Counts data
#160
scuhkf
opened
7 months ago
7
ParseCountsException: Invalid Counts data
#159
scuhkf
closed
7 months ago
0
Update version in __init__
#158
akurlovs
opened
7 months ago
1
"Some cells in meta did not exist in counts" error
#157
ndrubins
closed
7 months ago
2
Missing CellSign_active_interactions and CellSign_active_interactions_deconvoluted files when running Method2
#156
wfaalajr
closed
7 months ago
2
Exact p-value output file?
#155
ccl6
opened
7 months ago
1
Where is the iterations number file ?
#154
Portulaca666
opened
7 months ago
2
KeyError: 'VEGFA_FLT1_complex'
#153
PattF
closed
6 months ago
9
Unable to run cellphonedb due to database
#152
molybdenumt
closed
7 months ago
7
Relevance score in CPDB
#151
Pedramto89
closed
8 months ago
2
Cell expression thresholds
#150
jamesl-g
opened
8 months ago
1
Next