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Hi !
While working to data from a specific project, I recently noticed that it may happen that in the peptide table generated by ProteinQuantifier, may appear in some protein cases a number of pept…
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Dear Vadim,
I have an issue with the Genes.MaxLFQ in DIA-NN v1.9.
In my data set, the Genes IGHG2 correspond to only one Protein.Group. However, the the quantUTM values for PG.MaxLFQ and Genes.Max…
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Hi.
After analysis of my file, I got this message:
"WARNING: unknown fragment type VHS2_c2riboseqorf5_uORF_-; for fragments containing the N-terminus please specify the fragment type as 'b', for f…
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We recently are trying to reproduce the results of a published study with TMT-10. We used MSFraggerAdapter, followed by Percolator to calculate PEP, and ProteinProphet to do protein grouping. If we ta…
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Hi
Thanks for your work in DiaNN. I'm currently using the latest version of DIANN to process phosphoproteomics data, and I have obtained wonderful results. Which include tables of phosphorylation sit…
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There seems to be no example containing a `PEP` section - would it be possible to add one?
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I'm trying to replicate the analysis on the tra2 datasets with suppa.
I run the commands in the "commands.txt" file, but I've got an error in the psiPerEvent step.
Here's the command:
suppa.py psiP…
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Hi,
I did cell surface protein enrichment experiment using Pierce™ Cell Surface Protein Isolation Kit.
I used Sulfo-NHS-SS-Biotin, so the cleaved biotin modification is CAMthiopropanoyl (MW= 145.0…
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Hi,
is there any way to get a sitereport table analog to the LFQphospho workflow inside Fragpipe or is this not possible as quant is carried out by DIA-NN and not IonQuant
Thank you
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hi， I want to search a potential unknown modification. Should I build a library with the modification at first? What should I write in the Additional Option?