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I am having an issue after submitting my FASTA file of proteomics data.
This is showing.
I have always used the website with the same FASTA file. can someone please help me!
Using the URLconf defi…
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I'm wondering if there's something we can do about the splitting files to collection tools - this will likely become more important as collections become ubiquitous.
Currently, we have the [splitfa…
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Hi, I processed .d raw files with Fragpipe and wish to review the identifications.
It is not clear which raw files I should use because the data was read directly in Fragpipe and was not transformed…
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https://proteomics.cancer.gov/news_and_announcements/human-melanoma-proteome-atlas-proteogenomic-researchers-map-protein?cid=eb_govdel
- [ ] [create an issue on datahub](https://github.com/cBioPort…
jjgao updated
2 years ago
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Hello,
I am currently stuck at the following point:
I have a data set of FACS, Proteomics and Transcriptomics data.
I applied the `mcia` method to the data with full success. Plotting the data w…
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Hi, I've tried to color the points by a categorical variable (another column in my TSV file) but only got a greyish 3D point cloud. Tested on Firefox 56.0/Chrome 61.0.3163.100, OS X (v10.11.2). Please…
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To do when reviewing proteomics collections. Currently there is not an enforced pattern for [best_protein](https://microbiomedata.github.io/berkeley-schema-fy24/best_protein/) or [all_proteins](https:…
aclum updated
3 months ago
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My personal favorite feature of MS-GF+ is that the program allows one to use the results from a search to re-train the scoring parameters for your specific type of peptides. This feature is especiall…
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Hi guys
Do you recommend running gage on a FDR cutoff or differentially expressed genes?
thanks
Marwa