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microbiomedata
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nmdc-metadata
Managing metadata and policy around metadata in NMDC
https://microbiomedata.github.io/nmdc-schema/
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Replace autogenerated docs with redirect to current schema docs
#447
pkalita-lbl
closed
2 months ago
0
add EMP soild study - biosamples - omicsprocessing to Mongo and then Postgres
#446
dehays
closed
2 years ago
0
SPRUCE - Map GOLD IDs metaT and metaG to common biosamples
#445
ssarrafan
closed
2 years ago
4
SPRUCE - correct biosample links to analyses
#444
ssarrafan
closed
1 year ago
5
Microbes Persist - Correct data on portal
#443
ssarrafan
closed
2 years ago
2
Microbes Persist - Map GOLD IDs to EMSL & biosamples
#442
ssarrafan
opened
2 years ago
5
Microbes Persist - add dataset comment
#441
ssarrafan
opened
2 years ago
5
Microbes Persist biosample merging
#440
dehays
opened
2 years ago
1
missing data object emsl:output_598506
#439
dwinston
opened
2 years ago
1
inclusion of SPRUCE metaP activities - need related omics_processing JSON docs
#438
dehays
closed
2 years ago
0
Rename 40 SPRUCE biosamples from MN to MI
#437
pvangay
closed
1 year ago
5
populate GOLD sample identifiers for all BioScales biosamples
#436
dehays
closed
2 years ago
6
Missing biosample in NMDC Mongo
#435
dehays
closed
2 years ago
2
UI Insights for DH - Informative messages to help fix errors after validation
#434
ssarrafan
closed
2 years ago
2
add multiple credit associations to researchers in the study CREDIT objects for 7 studies
#433
dehays
closed
2 years ago
1
add 5 GOLD environment terms for EMSL only SPRUCE biosamples
#432
dehays
closed
2 years ago
1
JGI specific term for collection site
#431
ssarrafan
closed
2 years ago
1
MIxS Change in geo_loc_name
#430
mslarae13
closed
10 months ago
3
Compare enumerated lists between Index of Terms/Soil-NMDC-Template_Compiled and MIxS
#429
ssarrafan
closed
2 years ago
3
Migrate enumerated lists from Index of Terms to Soil-NMDC-Template_Compiled
#428
ssarrafan
closed
2 years ago
1
DH - Validations
#427
ssarrafan
closed
2 years ago
1
removed trailing carriage return from depth's 'GitHub Ticket'
#426
turbomam
opened
2 years ago
0
removed training carriage return from soil_type's syntax
#425
turbomam
opened
2 years ago
0
MIxS Soil collection_date appears in multiple tabs Soil-NMDC-Template_Compiled
#424
turbomam
closed
1 year ago
2
MIxS Soil 'extreme_salinity' not mentioned in any Soil-NMDC-Template_Compiled tab
#423
turbomam
closed
1 year ago
2
removed training whitespace in 'sample name '
#422
turbomam
closed
1 year ago
1
How does Soil-NMDC-Template_Compiled assert DH sections?
#421
turbomam
opened
2 years ago
1
microbiomedata/nmdc-metadata issues don't allow multiple assignees
#420
turbomam
opened
2 years ago
0
Add multivalued? column to Soil-NMDC-Template_Compiled
#419
turbomam
opened
2 years ago
1
DH: What determines section and column ordering in DH template from Soil-NMDC-Template_Compiled
#418
turbomam
opened
2 years ago
1
DH: row_ord column in Soil-NMDC-Template_Compiled
#417
turbomam
opened
2 years ago
0
DH - Create and connect a DB to DH for saving
#416
ssarrafan
closed
2 years ago
4
DH - Prioritize UI insights feedback to determine which features are required for January release
#415
ssarrafan
closed
2 years ago
2
DH - Discuss and decide how to handle complex MIxS terms that represent two fields
#414
ssarrafan
closed
2 years ago
3
DH - Discuss and decide on how to handle units in DH
#413
ssarrafan
closed
2 years ago
3
DH - Identify terms without formatting criteria and review at metadata meeting on 12/15
#412
ssarrafan
closed
2 years ago
5
DH - Implement all available validation checks for all terms using DH TSV config file
#411
ssarrafan
closed
2 years ago
2
DH - Ensure terms have values populated for elements and validate across template and schema
#410
ssarrafan
closed
2 years ago
1
DH - Document request for new terms from GSC
#409
ssarrafan
closed
2 years ago
1
DH - Create LinkML superset of NMDC, MIxS, JGI, ESML soil terms
#408
ssarrafan
closed
2 years ago
1
DH - Add JGI terms to composite terms in DH
#407
ssarrafan
closed
2 years ago
1
DH - map terms to source/origin on index of terms
#406
ssarrafan
closed
2 years ago
3
investigate and curate Mongo referential integrity and other issues
#405
dehays
closed
6 months ago
11
ordering of sections and columns in DataHarmonizer templates
#404
turbomam
opened
2 years ago
0
Report common values for INSDC field/package combinations
#403
turbomam
opened
2 years ago
1
Brodie's 5 samples environment
#402
ssarrafan
closed
2 years ago
4
Process NEON data and make available in portal
#401
ssarrafan
closed
1 year ago
4
Process EMP500 data from EBI and make available in portal
#400
ssarrafan
closed
2 years ago
17
need to link SPRUCE data objects to gold projects
#399
wdduncan
closed
2 years ago
8
Usage of slots and columns across authorities
#398
turbomam
opened
2 years ago
2
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