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microbiomedata
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nmdc-metadata
Managing metadata and policy around metadata in NMDC
https://microbiomedata.github.io/nmdc-schema/
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process for creation of raw fastq data object
#397
dehays
closed
3 years ago
2
NMDC Metadata Template V5
#396
mslarae13
closed
2 years ago
1
Parsing of NMDC Sample Metadata template -> mangling of special characters?
#395
turbomam
opened
3 years ago
2
Nested NaNs not scrubbed
#394
turbomam
opened
3 years ago
0
No examples of slots specific to plant package yet
#393
turbomam
opened
3 years ago
2
Awaiting example data in EnvironmentalMetadata tab
#392
turbomam
opened
3 years ago
4
Implied but undocumented relationships with size_frac
#391
turbomam
closed
1 year ago
3
NMDC Sample Metadata Template: currently undefined usage of samp_collect_device
#390
turbomam
opened
3 years ago
1
NMDC Sample Metadata Template's investigation type and mixs investigation type have almost nothing in common
#389
turbomam
opened
3 years ago
2
Sample Metadata "metadata" tab's isotope_exposure treatment not defined in mixs.yaml?
#388
turbomam
opened
3 years ago
1
Fields from Sample Metadata template's ProjectInformation matching no study slot?
#386
turbomam
opened
3 years ago
1
Sample Metadata template's ProjectInformation tab missing title
#385
turbomam
opened
3 years ago
2
Which ID-like column from the Sample Metadata template's ProjectInformation tab?
#384
turbomam
opened
3 years ago
3
confirm ingest of 39 biosamples with "bioscales:.*" IDs
#383
dwinston
closed
1 year ago
3
some biosamples not part_of a study
#382
dwinston
closed
3 years ago
6
Pull down the metadata from NCBI: PRJEB39497 (metaG), PRJEB39495 (16S rRNA), PRJEB39496 (fungal ITS)
#381
ssarrafan
closed
3 years ago
7
Links for schemas in README broken
#380
johanneswerner
opened
3 years ago
2
EnvO terms for Environmental biosamples
#379
jagadishcs
closed
3 years ago
1
S4G2 - Website for metadata submission, scope and requirements
#378
ssarrafan
closed
3 years ago
5
S4G2 - Metadata ingest, validate against schema
#377
ssarrafan
closed
3 years ago
6
S4G2 - Metadata ingest, Register new metadata with NMDC runtime
#376
ssarrafan
closed
3 years ago
5
S4G2 - Metadata ingest, extract metadata from spreadsheets
#375
ssarrafan
closed
3 years ago
9
S4G2 - Refine spreadsheet
#374
ssarrafan
closed
3 years ago
2
S4G2 - Conduct usability testing
#373
ssarrafan
closed
3 years ago
5
S4G2 - Collect metadata from SFAs
#372
ssarrafan
closed
9 months ago
5
Review and Finalize NMDC template headers
#371
mslarae13
opened
3 years ago
0
Update 3 FICUS datasets to reflect pre-GSP spreadsheets
#369
pvangay
closed
3 years ago
2
evaluate CORDA for use as curation process / UI
#368
dwinston
opened
3 years ago
1
Finalize taxonomy_ID vs organism for NCBI
#367
mslarae13
closed
3 years ago
1
Identify necessary Project information components
#366
mslarae13
closed
3 years ago
4
Project/study page and available metadata for BioScales project
#370
ssarrafan
closed
3 years ago
7
Finalized metadata training (slides and online activity)
#365
ssarrafan
closed
3 years ago
5
Finalize metadata for Neumann-FICUS
#364
mslarae13
opened
3 years ago
9
Finalize metadata map for Hess-FICUS
#363
mslarae13
closed
3 years ago
2
Add more integrity checks on fields in JSON schema 3
#362
ssarrafan
closed
9 months ago
6
Finalize Metadata map for Bowen-FICUS
#361
mslarae13
closed
3 years ago
3
Generate sample metadata description of header rows
#359
mslarae13
closed
3 years ago
4
Finish 4 priority packages Metadata Template
#358
mslarae13
closed
3 years ago
2
Add descriptive info to NOM data files are displayed
#357
pvangay
opened
3 years ago
2
Missing depth parameter on Brodie ER_DNA_379
#356
pvangay
opened
3 years ago
2
Add support for range values for Depth (Brodie dataset)
#355
pvangay
closed
3 years ago
7
Filtering by study then the study lat/lon produces different results
#354
pvangay
closed
3 years ago
1
Evaluate which sample environmental metadata should be searchable via portal
#353
pvangay
closed
2 years ago
2
Update sample environments for Stegen data
#352
pvangay
opened
3 years ago
2
Recheck sample and omics linkages for Stegen dataset
#351
pvangay
closed
3 years ago
2
Add citation to James Stegen's study page
#350
pvangay
closed
3 years ago
1
Figure out how to list samples in the data portal
#349
pvangay
opened
3 years ago
3
Create generalized rule(s) from business logic for JGI and EMSL to improve appropriate filtering of data
#348
ssarrafan
closed
9 months ago
6
Create documentation and templates to code (Python) business logic for NMDC
#347
ssarrafan
closed
9 months ago
4
Python expertise help for Bill and Donny
#346
ssarrafan
closed
3 years ago
3
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