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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/abodein/timeOmics
Confirm the following by editin…
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see helpdesk ticket
Re: Confirmation of curation session for PMID:30726745
Can we add a relation "affected_by" or some other phrase so that we can capture direct OF indirect modification event?
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The annotation standard for proteomics experiments are not clear enough for curators.
Problems that are causing issues:
1. Differentiating between a purification and an enrichment
2. What to …
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@hbarsnes @mvaudel @StSchulze
We have continued working with the metadata experimental design.
See example, https://github.com/PRIDE-Archive/pride-metadata-standard/tree/master/experimental-des…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Huber-group-EMBL/NPARC
Confirm the following by e…
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PRIDE sometimes returns peptides containing a # representing an oxidation of methionine. According to Griet, we should strip the #-symbols and search the database without them.
_[Original issue](htt…
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I'm thinking out loud here, but I am wondering if it would be a good move to fuse the low-level `MSnExperiment` and the other classes that contain processed data, such as features (`XCMSFeatureSet`) a…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/marcpaga/pulsedSilac
Confirm the following by edi…
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ConsensusID results can be strongly negatively affected by suboptimal input data.
In an example, ConsensusID was used to combine search results from Mascot, OMSSA, X! Tandem and MS-GF+. The pipeline …
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## Peptidome analysis
The (tryptic) peptidome is the complete set of (tryptic) peptides encoded in the genome of an organism. Unipept provides fast and flexible analysis tools for identifying the uni…