pombase pombase-chado issues

pombase / pombase-chado

PomBase code for accessing Chado

MIT License

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issues

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block a legacy term remapping

#1240 ValWood closed 1 week ago
2
Update to latest InterProScan - v 5.71-102.0

#1239 kimrutherford closed 3 weeks ago
1
Remove / hide the MobiDB low complexity predictions from the InterProScan data

#1238 kimrutherford closed 3 weeks ago
1
The disordered region features from MobiDB sometimes have incorrect types

#1237 kimrutherford closed 3 weeks ago
2
Add RNAcentral IDs to GPI files

#1235 kimrutherford closed 1 month ago
4
Use segmasker to create low complexity regions

#1234 kimrutherford closed 1 month ago
1
Add "assigned_by" property in Chado for all modifcations from PomBase

#1233 kimrutherford closed 1 month ago
1
Modifications, add assigned by column

#1232 ValWood closed 1 month ago
6
GO terms bug

#1229 ValWood closed 1 month ago
6
Filter imported duplicates where only evidence code is different

#1228 ValWood closed 1 month ago
2
Add residues to UniProtKB import

#1227 ValWood closed 1 month ago
3
decouple modifications

#1226 ValWood closed 1 month ago
3
Odd non filtering cases

#1225 ValWood closed 2 months ago
10
MGI xrefs failing GO checks

#1224 ValWood closed 4 days ago
5
Filter duplicate modifications from UniProt

#1223 kimrutherford opened 2 months ago
35
Histone modifications are displayed inconsitently

#1222 kimrutherford opened 2 months ago
0
can't locate these

#1221 ValWood closed 2 months ago
10
Add Lipidation data from UniProt

#1220 kimrutherford closed 2 months ago
10
Is GO updating?

#1219 ValWood closed 1 month ago
5
Attempt to install and run InterProScan

#1218 kimrutherford closed 1 month ago
26
Move manual paralogs from contig file into a TSV file in SVN

#1217 kimrutherford closed 2 months ago
1
Possible modifications to import

#1216 ValWood closed 2 months ago
14
Update InterPro to v101.0

#1215 kimrutherford closed 2 months ago
3
more paralogs, I missed

#1214 ValWood closed 2 months ago
20
possible additional modifications

#1213 ValWood closed 2 months ago
4
create export file for qualititive expression data

#1212 ValWood opened 2 months ago
2
Export all publications with exp data for RNA genes

#1211 ValWood opened 2 months ago
4
Make annotations in Chado for some of the data from UniProt

#1210 kimrutherford closed 2 months ago
6
Duplicate publication titles - possible PubMed duplicates

#1209 kimrutherford opened 3 months ago
3
Move SO annotations out of contig files

#1208 kimrutherford closed 3 months ago
7
A question for the review I'm writing

#1207 ValWood closed 2 months ago
21
Change loading code to handle a date column in ortholog TSV files

#1206 kimrutherford closed 3 months ago
0
Change orthologs TSV reader to handle qualifiers and reference

#1205 kimrutherford closed 3 months ago
1
PMID mentioning gene not shown in leterature section

#1204 ValWood closed 3 months ago
9
Include N/C flags in ortholog export files for fusion proteins

#1203 kimrutherford closed 3 months ago
3
map all incoming transit_peptide from uniprot to mitochondrial_targeting_signal

#1202 ValWood closed 3 months ago
5
delete coiled-coil from contigs

#1201 ValWood closed 3 months ago
10
Missing references for human orthologs of gpd1

#1200 kimrutherford closed 3 months ago
37
Load fails if a term in GO-CAM data is obsolete

#1199 kimrutherford closed 3 months ago
4
Reciprocal check for modifications

#1197 ValWood opened 3 months ago
6
Compare SignalP and Phobius (try to get better coverage of transsit peptides and signal peptides)

#1196 ValWood opened 3 months ago
2
Create high confidence datasets for ER signal sequence (true positives and true negatives)

#1195 ValWood opened 3 months ago
12
Annotated Residues as GO MF extensions, and propagating to other places

#1194 ValWood closed 1 month ago
11
legacy GO error, not oading, not reported

#1193 ValWood closed 4 months ago
7
some rpb alleles are conflated

#1192 ValWood closed 4 days ago
16
Include manual orthologs in the annotation counts / stats

#1191 kimrutherford closed 4 months ago
5
chance evidence for TMMs

#1190 ValWood closed 4 months ago
1
Filter redundant annotations from the same publication

#1189 kimrutherford closed 3 months ago
5
exo5-D176A D176A invalid_error peptide sequence missing

#1188 ValWood opened 4 months ago
4
allele name update mcm4-td

#1187 ValWood closed 4 months ago
3