pombase pombase-chado issues

pombase / pombase-chado

PomBase code for accessing Chado

MIT License

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issues

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UniPathway mapping, not filtered

#1186 ValWood closed 2 days ago
3
Comment field rules

#1185 ValWood opened 3 days ago
6
Filter PomBase parent disease associations with PB REF:0000003

#1184 ValWood opened 3 days ago
4
correlated_with disease list

#1183 ValWood closed 3 days ago
6
Training datasets for ML/AI for named entity recognition

#1182 ValWood opened 1 week ago
3
Training datasets for ML/AI - publication centric

#1181 ValWood opened 1 week ago
5
Update PDB data file

#1180 kimrutherford closed 1 week ago
12
Update to InterPro v100.0

#1179 kimrutherford closed 2 weeks ago
1
Load failed - possible bug in OBO reading code

#1178 kimrutherford closed 3 weeks ago
4
Query GO for pombe GO-CAMs

#1177 kimrutherford closed 1 week ago
10
Metric : Total genes in GO CAM models

#1176 ValWood closed 1 week ago
10
Attribution for pathways

#1174 ValWood opened 1 month ago
11
Use the PRO short name in GPI file

#1173 kimrutherford closed 1 month ago
10
Display 'binding and ' active site' from UniPRot

#1172 ValWood opened 1 month ago
2
PTM processing from Uniprot

#1171 ValWood opened 1 month ago
0
Add 'buried residues' track to protein viewer

#1169 ValWood opened 1 month ago
0
malformed GO annotations

#1168 ValWood closed 1 month ago
4
Update InterPro to v99.0

#1167 kimrutherford closed 1 month ago
2
Load complex portal UIDs into Chado and put them in the GPAD file

#1166 ValWood closed 1 month ago
20
Store IDs of public GO-CAMs as featureprops in Chado

#1165 kimrutherford closed 2 months ago
3
Fix weird feature_cvtermprop source_file from GOA loading

#1164 kimrutherford closed 2 months ago
7
Remove code for reading exogenous_promoter from Canto JSON

#1163 kimrutherford closed 2 months ago
3
block false positive publications in gene page publication list

#1162 ValWood opened 2 months ago
3
Find all synonym fields with spaces

#1161 ValWood closed 2 months ago
3
600 missing annotations today - mostly protein binding

#1160 kimrutherford closed 2 months ago
2
log file alleles not beginning with a gene name

#1159 ValWood closed 2 months ago
4
PHAF files change gene name to "gene symbol"

#1157 ValWood closed 2 months ago
4
Some promoters missing from Chado

#1156 kimrutherford closed 3 months ago
2
Switch some RNA allele "other" type to nucleotide_deletion

#1155 kimrutherford closed 3 months ago
3
Checks for phenotype data (errors picked up by Monarch)

#1154 ValWood closed 2 months ago
15
some WT alleles have systemtic IDs when genes are named

#1153 ValWood closed 3 months ago
4
version of GAF for annotation checking

#1152 ValWood closed 3 months ago
6
remove a legacy data remapping

#1151 ValWood closed 3 months ago
2
legacy annotations not visible in PomBase

#1150 ValWood closed 3 months ago
2
Allow the loading order of IEA data to be prioritised

#1149 ValWood closed 3 months ago
18
Add gene and PMID details from PDB to Chado

#1148 kimrutherford closed 3 months ago
3
global fix

#1147 ValWood closed 3 months ago
3
Include new style genotype interactions in export file for BioGRID

#1146 kimrutherford opened 3 months ago
1
Create a new interactions file for BioGRID

#1145 kimrutherford closed 3 months ago
0
Check for duplicate gene names when loading contig files

#1144 kimrutherford closed 4 months ago
3
moa1-7dsr

#1143 ValWood closed 4 months ago
2
prp10-1 allele issue

#1142 ValWood closed 4 months ago
11
protein modification errors

#1141 ValWood closed 3 months ago
27
GO evidence code with incorrect reference

#1140 ValWood closed 4 months ago
2
Update InterPro to 98.0

#1139 kimrutherford closed 4 months ago
1
annotations with column 17 in legacy GO file don't appear to parse

#1138 ValWood closed 4 months ago
2
other species in "with field" for binding annotation

#1135 ValWood closed 4 months ago
3
entity "Type" in GO-export files

#1134 ValWood closed 5 months ago
1
log.2024-01-01-21-44-33.chado_checks.modification_on_wrong_residue

#1133 ValWood closed 5 months ago
1
fix, two alleles with the same name

#1132 ValWood closed 5 months ago
5